Protein : Qrob_P0125670.2 Q. robur
Protein Identifier  ? Qrob_P0125670.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) KOG1632//KOG1827//KOG1886 - Uncharacterized PHD Zn-finger protein [General function prediction only]. // Chromatin remodeling complex RSC subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics Transcription]. // BAH domain proteins [Transcription]. Code Enzyme  EC:1.14.11.27
Gene Prediction Quality  validated Protein length 

Sequence

Length: 243  
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008270 zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
GO:0003682 chromatin binding Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_006822 1 235 + 235 Gaps:26 96.76 216 91.39 6e-139 PHD finger family protein / bromo-adjacent domain-containing protein isoform 1
blastp_kegg lcl|cam:101512538 1 235 + 235 Gaps:26 95.87 218 89.47 2e-138 protein polybromo-1-like
blastp_kegg lcl|gmx:100787968 1 235 + 235 Gaps:26 96.76 216 89.00 3e-138 BAH and coiled-coil domain-containing protein 1-like
blastp_kegg lcl|gmx:100526926 1 235 + 235 Gaps:26 96.76 216 89.47 5e-138 uncharacterized LOC100526926
blastp_kegg lcl|rcu:RCOM_1449090 1 235 + 235 Gaps:26 96.76 216 89.47 5e-138 phd finger transcription factor putative
blastp_kegg lcl|pper:PRUPE_ppa011301mg 1 235 + 235 Gaps:26 96.76 216 91.87 6e-138 hypothetical protein
blastp_kegg lcl|pvu:PHAVU_009G004500g 1 235 + 235 Gaps:26 96.76 216 89.47 5e-137 hypothetical protein
blastp_kegg lcl|pmum:103335707 1 235 + 235 Gaps:26 96.76 216 91.39 6e-137 chromatin structure-remodeling complex subunit RSC1-like
blastp_kegg lcl|mdm:103445111 1 235 + 235 Gaps:26 96.76 216 89.95 9e-136 protein polybromo-1-like
blastp_kegg lcl|mdm:103428630 1 235 + 235 Gaps:26 96.76 216 89.47 8e-135 protein polybromo-1-like
blastp_pdb 3kqi_A 152 226 + 75 Gaps:7 93.33 75 38.57 2e-11 mol:protein length:75 PHD finger protein 2
blastp_pdb 1wep_A 145 227 + 83 Gaps:10 94.94 79 36.00 9e-10 mol:protein length:79 PHF8
blastp_pdb 3kv4_A 166 233 + 68 Gaps:1 15.44 447 33.33 2e-09 mol:protein length:447 PHD finger protein 8
blastp_pdb 3kv6_D 166 235 + 70 Gaps:7 14.55 488 36.62 9e-09 mol:protein length:488 JmjC domain-containing histone demethylation
blastp_pdb 3kv6_A 166 235 + 70 Gaps:7 14.55 488 36.62 9e-09 mol:protein length:488 JmjC domain-containing histone demethylation
blastp_pdb 3kv5_A 166 235 + 70 Gaps:7 14.55 488 36.62 9e-09 mol:protein length:488 JmjC domain-containing histone demethylation
blastp_pdb 3kv5_D 166 235 + 70 Gaps:7 14.55 488 36.62 9e-09 mol:protein length:488 JmjC domain-containing histone demethylation
blastp_pdb 1w4s_A 20 133 + 114 Gaps:4 66.67 174 30.17 2e-08 mol:protein length:174 POLYBROMO 1 PROTEIN
blastp_pdb 2fuu_A 166 215 + 50 none 80.65 62 32.00 2e-07 mol:protein length:62 bromodomain PHD finger transcription factor
blastp_pdb 2fui_A 166 215 + 50 none 80.65 62 32.00 2e-07 mol:protein length:62 bromodomain PHD finger transcription factor
blastp_uniprot_sprot sp|O75151|PHF2_HUMAN 166 230 + 65 Gaps:1 6.02 1096 36.36 1e-10 Lysine-specific demethylase PHF2 OS Homo sapiens GN PHF2 PE 1 SV 4
blastp_uniprot_sprot sp|Q9WTU0|PHF2_MOUSE 166 230 + 65 Gaps:1 6.02 1096 36.36 1e-10 Lysine-specific demethylase PHF2 OS Mus musculus GN Phf2 PE 1 SV 2
blastp_uniprot_sprot sp|Q6P949|PHF2_DANRE 166 230 + 65 Gaps:1 6.21 1063 33.33 7e-10 Lysine-specific demethylase phf2 OS Danio rerio GN phf2 PE 2 SV 3
blastp_uniprot_sprot sp|E6ZGB4|PHF2_DICLA 166 230 + 65 Gaps:1 6.11 1081 33.33 1e-09 Lysine-specific demethylase phf2 OS Dicentrarchus labrax GN phf2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CH95|PHF8_DANRE 166 233 + 68 Gaps:1 6.69 1032 31.88 2e-09 Histone lysine demethylase PHF8 OS Danio rerio GN phf8 PE 1 SV 1
blastp_uniprot_sprot sp|Q9UPP1|PHF8_HUMAN 166 213 + 48 none 4.53 1060 39.58 6e-09 Histone lysine demethylase PHF8 OS Homo sapiens GN PHF8 PE 1 SV 3
blastp_uniprot_sprot sp|Q80TJ7|PHF8_MOUSE 166 213 + 48 none 4.69 1023 39.58 7e-09 Histone lysine demethylase PHF8 OS Mus musculus GN Phf8 PE 1 SV 2
blastp_uniprot_sprot sp|Q08D35|KDM7A_XENTR 166 230 + 65 Gaps:1 7.16 922 33.33 4e-08 Lysine-specific demethylase 7A OS Xenopus tropicalis GN kdm7a PE 2 SV 1
blastp_uniprot_sprot sp|Q9P281|BAHC1_HUMAN 21 112 + 92 Gaps:1 3.49 2608 31.87 5e-08 BAH and coiled-coil domain-containing protein 1 OS Homo sapiens GN BAHCC1 PE 2 SV 3
blastp_uniprot_sprot sp|Q6ZMT4|KDM7A_HUMAN 166 235 + 70 Gaps:7 7.55 941 36.62 6e-08 Lysine-specific demethylase 7A OS Homo sapiens GN KDM7A PE 1 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 21 137 117 SM00439 none Bromo adjacent homology domain IPR001025
ProSiteProfiles 21 137 117 PS51038 none BAH domain profile. IPR001025
SUPERFAMILY 166 219 54 SSF57903 none none IPR011011
Pfam 167 215 49 PF00628 none PHD-finger IPR019787
ProSiteProfiles 165 216 52 PS50016 none Zinc finger PHD-type profile. IPR019787
SMART 167 214 48 SM00249 none PHD zinc finger IPR001965
Gene3D 165 223 59 G3DSA:3.30.40.10 none none IPR013083
ProSitePatterns 168 213 46 PS01359 none Zinc finger PHD-type signature. IPR019786
Pfam 22 136 115 PF01426 none BAH domain IPR001025
PANTHER 1 144 144 PTHR12505 none none none

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1

0 Targeting