Protein : Qrob_P0125250.2 Q. robur
Protein Identifier  ? Qrob_P0125250.2 Organism . Name  Quercus robur
Score  29.2 Score Type  egn
Protein Description  (M=5) K11292 - transcription elongation factor SPT6 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1459  
Kegg Orthology  K11292
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0006357 regulation of transcription from RNA polymerase II promoter Any process that modulates the frequency, rate or extent of transcription from an RNA polymerase II promoter.
GO:0006139 nucleobase-containing compound metabolic process Any cellular metabolic process involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0032784 regulation of DNA-templated transcription, elongation Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.

35 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103342255 66 1458 + 1393 Gaps:30 84.20 1633 81.38 0.0 transcription elongation factor SPT6
blastp_kegg lcl|pper:PRUPE_ppa000164mg 83 1458 + 1376 Gaps:30 87.44 1553 81.00 0.0 hypothetical protein
blastp_kegg lcl|cmo:103485847 51 1458 + 1408 Gaps:35 86.50 1615 79.38 0.0 transcription elongation factor SPT6
blastp_kegg lcl|csv:101219281 51 1458 + 1408 Gaps:36 85.71 1631 78.83 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|vvi:100241331 53 1458 + 1406 Gaps:42 84.46 1660 79.10 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|pvu:PHAVU_001G117200g 54 1458 + 1405 Gaps:36 83.44 1679 78.02 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_044643 87 1458 + 1372 Gaps:33 83.67 1617 79.67 0.0 Global transcription factor group B1 isoform 1
blastp_kegg lcl|pxb:103966217 66 1458 + 1393 Gaps:34 83.35 1652 79.23 0.0 transcription elongation factor SPT6
blastp_kegg lcl|gmx:100808591 85 1458 + 1374 Gaps:26 82.26 1663 78.00 0.0 transcription elongation factor SPT6-like
blastp_kegg lcl|mdm:103426069 66 1458 + 1393 Gaps:31 82.42 1667 79.11 0.0 transcription elongation factor SPT6
blastp_pdb 3psi_A 240 1437 + 1198 Gaps:127 94.42 1219 25.46 1e-72 mol:protein length:1219 Transcription elongation factor SPT6
blastp_pdb 3psf_A 240 1162 + 923 Gaps:113 85.24 1030 25.85 4e-51 mol:protein length:1030 Transcription elongation factor SPT6
blastp_pdb 2l3t_A 1251 1437 + 187 Gaps:7 92.46 199 30.43 1e-18 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3psk_D 1251 1437 + 187 Gaps:7 87.20 211 30.43 6e-18 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_C 1251 1437 + 187 Gaps:7 87.20 211 30.43 6e-18 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_B 1251 1437 + 187 Gaps:7 87.20 211 30.43 6e-18 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psk_A 1251 1437 + 187 Gaps:7 87.20 211 30.43 6e-18 mol:protein length:211 Transcription elongation factor SPT6
blastp_pdb 3psj_A 1251 1437 + 187 Gaps:7 87.62 210 30.43 6e-18 mol:protein length:210 Transcription elongation factor SPT6
blastp_pdb 3pjp_B 1251 1437 + 187 Gaps:11 92.46 199 30.98 3e-16 mol:protein length:199 Transcription elongation factor SPT6
blastp_pdb 3pjp_A 1251 1437 + 187 Gaps:11 92.46 199 30.98 3e-16 mol:protein length:199 Transcription elongation factor SPT6
blastp_uniprot_sprot sp|Q62383|SPT6H_MOUSE 210 1443 + 1234 Gaps:209 76.42 1726 29.64 1e-148 Transcription elongation factor SPT6 OS Mus musculus GN Supt6h PE 1 SV 2
blastp_uniprot_sprot sp|Q7KZ85|SPT6H_HUMAN 210 1443 + 1234 Gaps:209 76.42 1726 29.80 2e-148 Transcription elongation factor SPT6 OS Homo sapiens GN SUPT6H PE 1 SV 2
blastp_uniprot_sprot sp|Q8UVK2|SPT6H_DANRE 205 1443 + 1239 Gaps:201 76.36 1726 29.74 8e-145 Transcription elongation factor SPT6 OS Danio rerio GN supt6h PE 1 SV 1
blastp_uniprot_sprot sp|Q9W420|SPT6H_DROME 142 1458 + 1317 Gaps:188 70.89 1831 28.20 5e-113 Transcription elongation factor SPT6 OS Drosophila melanogaster GN Spt6 PE 1 SV 1
blastp_uniprot_sprot sp|Q09915|SPT6_SCHPO 32 1437 + 1406 Gaps:183 97.07 1365 29.51 2e-109 Transcription elongation factor spt6 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN spt6 PE 1 SV 2
blastp_uniprot_sprot sp|Q2U561|SPT6_ASPOR 87 1437 + 1351 Gaps:146 92.33 1422 28.33 2e-106 Transcription elongation factor spt6 OS Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN spt6 PE 3 SV 1
blastp_uniprot_sprot sp|Q93148|SPT6H_CAEBR 251 1443 + 1193 Gaps:185 81.00 1521 26.46 1e-103 Suppressor of Ty 6 homolog OS Caenorhabditis briggsae GN emb-5 PE 2 SV 2
blastp_uniprot_sprot sp|P34703|SPT6H_CAEEL 394 1454 + 1061 Gaps:138 73.18 1521 27.04 4e-102 Suppressor of Ty 6 homolog OS Caenorhabditis elegans GN emb-5 PE 1 SV 1
blastp_uniprot_sprot sp|Q5B7Q7|SPT6_EMENI 87 1437 + 1351 Gaps:145 92.45 1417 27.86 2e-101 Transcription elongation factor spt6 OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN spt6 PE 3 SV 2
blastp_uniprot_sprot sp|Q4WWH6|SPT6_ASPFU 87 1437 + 1351 Gaps:162 92.32 1420 27.99 7e-101 Transcription elongation factor spt6 OS Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN spt6 PE 3 SV 1

26 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1223 1439 217 PF14633 none SH2 domain IPR000980
SMART 744 862 119 SM00732 none Likely ribonuclease with RNase H fold. IPR006641
Gene3D 1364 1440 77 G3DSA:3.30.505.10 none none IPR000980
Pfam 743 899 157 PF14639 none Holliday-junction resolvase-like of SPT6 IPR028231
PANTHER 386 1444 1059 PTHR10145:SF6 none none IPR017072
Pfam 1017 1131 115 PF14878 none Death-like domain of SPT6 IPR027999
Gene3D 953 1109 157 G3DSA:1.10.150.310 none none IPR023097
Gene3D 889 941 53 G3DSA:1.10.3500.10 none none IPR023323
Gene3D 486 728 243 G3DSA:1.10.3500.10 none none IPR023323
PANTHER 1 367 367 PTHR10145:SF6 none none IPR017072
Coils 159 183 25 Coil none none none
Pfam 903 1004 102 PF14635 none Helix-hairpin-helix motif none
SUPERFAMILY 914 1005 92 SSF47781 "Reactome:REACT_216" none IPR010994
PANTHER 1 367 367 PTHR10145 none none none
PANTHER 386 1444 1059 PTHR10145 none none none
Gene3D 1127 1207 81 G3DSA:2.40.50.140 none none IPR012340
ProSiteProfiles 1135 1205 71 PS50126 none S1 domain profile. IPR003029
SUPERFAMILY 330 723 394 SSF158832 none none none
Pfam 37 117 81 PF14632 none Acidic N-terminal SPT6 IPR028083
SUPERFAMILY 744 899 156 SSF53098 none none IPR012337
SUPERFAMILY 1364 1441 78 SSF55550 none none IPR000980
SUPERFAMILY 1130 1209 80 SSF50249 none none IPR012340
SUPERFAMILY 1018 1110 93 SSF47781 "Reactome:REACT_216" none IPR010994
PIRSF 3 1456 1454 PIRSF036947 none none IPR017072
SMART 1133 1205 73 SM00316 none Ribosomal protein S1-like RNA-binding domain IPR022967
Gene3D 753 888 136 G3DSA:3.30.420.140 none none IPR006641

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Champenoux_2015_nEpis_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,53 25,47 27,72 lod 4.4 8.9
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Champenoux_2015_nSecLBD_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 25,78 25,47 27,72 lod 6.3 16.6

0 Targeting