Protein : Qrob_P0123750.2 Q. robur
Protein Identifier  ? Qrob_P0123750.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=2) K14555 - U3 small nucleolar RNA-associated protein 13 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 268  
Kegg Orthology  K14555
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0006364 rRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
GO:0032040 small-subunit processome A large ribonucleoprotein complex that is an early preribosomal complex. In S. cerevisiae, it has a size of 80S and consists of the 35S pre-rRNA, early-associating ribosomal proteins most of which are part of the small ribosomal subunit, the U3 snoRNA and associated proteins.

18 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025503 5 267 + 263 Gaps:11 29.76 887 75.00 1e-122 Transducin family protein / WD-40 repeat family protein
blastp_kegg lcl|vvi:100252767 5 267 + 263 Gaps:3 29.76 887 75.00 4e-121 transducin beta-like protein 3-like
blastp_kegg lcl|cic:CICLE_v10018804mg 5 267 + 263 Gaps:4 29.59 882 71.26 2e-120 hypothetical protein
blastp_kegg lcl|cit:102617966 5 267 + 263 Gaps:4 29.59 882 71.26 2e-120 transducin beta-like protein 3-like
blastp_kegg lcl|pop:POPTR_0019s07170g 5 266 + 262 Gaps:14 29.54 853 73.02 2e-116 POPTRDRAFT_573797 hypothetical protein
blastp_kegg lcl|rcu:RCOM_1327280 5 267 + 263 Gaps:6 29.57 876 70.27 1e-115 U3 small nucleolar RNA-associated protein putative (EC:2.7.11.7)
blastp_kegg lcl|pvu:PHAVU_003G200800g 5 267 + 263 Gaps:7 28.99 883 70.31 6e-115 hypothetical protein
blastp_kegg lcl|gmx:100807385 5 267 + 263 Gaps:7 28.99 883 71.48 2e-109 transducin beta-like protein 3-like
blastp_kegg lcl|csv:101209097 5 267 + 263 Gaps:10 29.05 871 69.57 3e-107 transducin beta-like protein 3-like
blastp_kegg lcl|gmx:100783244 5 267 + 263 Gaps:11 28.67 879 71.03 4e-107 transducin beta-like protein 3-like
blastp_uniprot_sprot sp|Q12788|TBL3_HUMAN 5 191 + 187 none 23.14 808 30.48 2e-26 Transducin beta-like protein 3 OS Homo sapiens GN TBL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q5U2W5|TBL3_RAT 5 186 + 182 none 22.75 800 32.97 2e-25 Transducin beta-like protein 3 OS Rattus norvegicus GN Tbl3 PE 2 SV 1
blastp_uniprot_sprot sp|Q8C4J7|TBL3_MOUSE 5 186 + 182 none 22.72 801 32.97 4e-25 Transducin beta-like protein 3 OS Mus musculus GN Tbl3 PE 2 SV 1
blastp_uniprot_sprot sp|Q2KJJ5|TBL3_BOVIN 5 186 + 182 none 22.75 800 31.87 8e-25 Transducin beta-like protein 3 OS Bos taurus GN TBL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9USN3|UTP13_SCHPO 5 183 + 179 Gaps:14 23.81 777 30.81 1e-23 Probable U3 small nucleolar RNA-associated protein 13 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN utp13 PE 3 SV 3
blastp_uniprot_sprot sp|Q05946|UTP13_YEAST 5 186 + 182 Gaps:13 23.87 817 29.74 3e-22 U3 small nucleolar RNA-associated protein 13 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN UTP13 PE 1 SV 1
rpsblast_cdd gnl|CDD|204007 53 186 + 134 Gaps:2 98.55 138 36.03 4e-38 pfam08625 Utp13 Utp13 specific WD40 associated domain. Utp13 is a component of the five protein Pwp2 complex that forms part of a stable particle subunit independent of the U3 small nucleolar ribonucleoprotein that is essential for the initial assembly steps of the 90S pre-ribosome. Pwp2 is capable of interacting directly with the 35 S pre-rRNA 5' end.
rpsblast_kog gnl|CDD|35540 5 189 + 185 Gaps:1 23.74 775 39.13 6e-55 KOG0319 KOG0319 KOG0319 WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification].

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 5 213 209 PTHR19854 none none none
Pfam 53 186 134 PF08625 none Utp13 specific WD40 associated domain IPR013934
PANTHER 5 213 209 PTHR19854:SF15 none none none

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting