Protein : Qrob_P0123730.2 Q. robur
Protein Identifier  ? Qrob_P0123730.2 Organism . Name  Quercus robur
Score  91.1 Score Type  egn
Protein Description  (M=1) K12825 - splicing factor 3A subunit 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 807  
Kegg Orthology  K12825
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0006396 RNA processing Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101214788 1 806 + 806 Gaps:41 100.00 809 79.98 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|vvi:100242352 1 806 + 806 Gaps:22 100.00 814 82.19 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|csv:101226809 1 806 + 806 Gaps:41 100.00 809 79.73 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|cmo:103485445 1 806 + 806 Gaps:45 100.00 807 80.05 0.0 probable splicing factor 3A subunit 1
blastp_kegg lcl|tcc:TCM_011316 1 806 + 806 Gaps:24 100.00 818 79.83 0.0 SWAP/surp domain-containing protein / ubiquitin family protein
blastp_kegg lcl|gmx:100797261 1 806 + 806 Gaps:18 100.00 798 83.58 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|cam:101498128 1 806 + 806 Gaps:17 100.00 809 83.07 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|gmx:100790309 1 806 + 806 Gaps:23 99.88 802 82.77 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|gmx:100794736 1 806 + 806 Gaps:25 99.88 806 82.86 0.0 probable splicing factor 3A subunit 1-like
blastp_kegg lcl|pvu:PHAVU_007G037600g 1 806 + 806 Gaps:14 100.00 808 82.05 0.0 hypothetical protein
blastp_pdb 1we6_A 700 803 + 104 Gaps:4 90.09 111 81.00 3e-46 mol:protein length:111 splicing factor putative
blastp_pdb 2dt6_A 61 125 + 65 Gaps:3 96.88 64 62.90 5e-18 mol:protein length:64 Splicing factor 3 subunit 1
blastp_pdb 2dt7_B 169 241 + 73 Gaps:2 83.53 85 53.52 2e-16 mol:protein length:85 Splicing factor 3 subunit 1
blastp_pdb 1we7_A 702 803 + 102 Gaps:5 89.57 115 44.66 2e-14 mol:protein length:115 Sf3a1 protein
blastp_pdb 1zkh_A 719 802 + 84 Gaps:4 100.00 86 44.19 9e-11 mol:protein length:86 Splicing factor 3 subunit 1
blastp_pdb 4dgw_B 182 316 + 135 Gaps:10 83.55 152 27.56 7e-06 mol:protein length:152 Pre-mRNA-splicing factor PRP21
blastp_uniprot_sprot sp|Q8RXF1|SF3A1_ARATH 1 806 + 806 Gaps:45 100.00 785 72.36 0.0 Probable splicing factor 3A subunit 1 OS Arabidopsis thaliana GN At1g14650 PE 1 SV 2
blastp_uniprot_sprot sp|Q8K4Z5|SF3A1_MOUSE 52 526 + 475 Gaps:45 60.68 791 42.29 3e-86 Splicing factor 3A subunit 1 OS Mus musculus GN Sf3a1 PE 1 SV 1
blastp_uniprot_sprot sp|A2VDN6|SF3A1_BOVIN 52 526 + 475 Gaps:47 60.78 793 41.91 4e-86 Splicing factor 3A subunit 1 OS Bos taurus GN SF3A1 PE 2 SV 1
blastp_uniprot_sprot sp|Q15459|SF3A1_HUMAN 52 526 + 475 Gaps:47 60.78 793 41.91 4e-86 Splicing factor 3A subunit 1 OS Homo sapiens GN SF3A1 PE 1 SV 1
blastp_uniprot_sprot sp|O13900|SA114_SCHPO 54 328 + 275 Gaps:24 53.01 481 38.04 4e-42 Pre-mRNA-splicing factor sap114 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN sap114 PE 1 SV 1
blastp_uniprot_sprot sp|Q86A14|SF3A1_DICDI 175 329 + 155 Gaps:1 20.53 760 42.95 2e-32 Probable splicing factor 3A subunit 1 OS Dictyostelium discoideum GN sf3a1 PE 3 SV 1
blastp_uniprot_sprot sp|P32524|PRP21_YEAST 61 306 + 246 Gaps:63 68.93 280 32.12 2e-07 Pre-mRNA-splicing factor PRP21 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN PRP21 PE 1 SV 1
blastp_uniprot_sprot sp|Q8IWX8|CHERP_HUMAN 59 125 + 67 Gaps:4 7.53 916 40.58 2e-06 Calcium homeostasis endoplasmic reticulum protein OS Homo sapiens GN CHERP PE 1 SV 3
blastp_uniprot_sprot sp|Q8CGZ0|CHERP_MOUSE 59 125 + 67 Gaps:4 7.37 936 40.58 2e-06 Calcium homeostasis endoplasmic reticulum protein OS Mus musculus GN Cherp PE 1 SV 1
rpsblast_cdd gnl|CDD|204856 245 474 + 230 Gaps:12 100.00 230 40.87 4e-57 pfam12230 PRP21_like_P Pre-mRNA splicing factor PRP21 like protein. This domain family is found in eukaryotes and is typically between 212 and 238 amino acids in length. The family is found in association with pfam01805. There are two completely conserved residues (W and H) that may be functionally important. PRP21 is required for assembly of the prespliceosome and it interacts with U2 snRNP and/or pre-mRNA in the prespliceosome. This family also contains proteins similar to PRP21 such as the mammalian SF3a. SF3a also interacts with U2 snRNP from the prespliceosome converting it to its active form.
rpsblast_cdd gnl|CDD|176395 731 806 + 76 Gaps:1 98.68 76 49.33 5e-25 cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60 66 and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains referred to collectively as the SURP module at its amino-terminus.
rpsblast_cdd gnl|CDD|197818 63 241 + 179 none 100.00 54 77.78 2e-18 smart00648 SWAP Suppressor-of-White-APricot splicing regulator. domain present in regulators which are responsible for pre-mRNA splicing processes.
rpsblast_cdd gnl|CDD|201983 63 240 + 178 Gaps:2 100.00 54 77.78 3e-17 pfam01805 Surp Surp module. This domain is also known as the SWAP domain. SWAP stands for Suppressor-of-White-APricot. It has been suggested that these domains may be RNA binding.
rpsblast_cdd gnl|CDD|204310 515 721 + 207 Gaps:64 30.72 804 38.46 4e-12 pfam09770 PAT1 Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.

17 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSiteProfiles 190 232 43 PS50128 none SURP motif repeat profile. IPR000061
PANTHER 21 806 786 PTHR15316:SF1 none none none
ProSiteProfiles 65 107 43 PS50128 none SURP motif repeat profile. IPR000061
Pfam 247 473 227 PF12230 none Pre-mRNA splicing factor PRP21 like protein IPR022030
ProSiteProfiles 747 803 57 PS50053 none Ubiquitin domain profile. IPR000626
SUPERFAMILY 700 804 105 SSF54236 none none IPR029071
SUPERFAMILY 168 240 73 SSF109905 none none IPR000061
Pfam 187 240 54 PF01805 none Surp module IPR000061
Pfam 63 115 53 PF01805 none Surp module IPR000061
SMART 188 241 54 SM00648 none Suppressor-of-White-APricot splicing regulator IPR000061
SMART 63 116 54 SM00648 none Suppressor-of-White-APricot splicing regulator IPR000061
Gene3D 733 800 68 G3DSA:3.10.20.90 none none none
SUPERFAMILY 36 115 80 SSF109905 none none IPR000061
PANTHER 21 806 786 PTHR15316 none none none
Coils 270 295 26 Coil none none none
Pfam 734 801 68 PF00240 none Ubiquitin family IPR000626
SMART 727 799 73 SM00213 none Ubiquitin homologues IPR000626

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

0 Targeting