Protein : Qrob_P0123640.2 Q. robur
Protein Identifier  ? Qrob_P0123640.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K02256 - cytochrome c oxidase subunit I [EC:1.9.3.1] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 554  
Kegg Orthology  K02256
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0005506 iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0055114 oxidation-reduction process A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0004129 cytochrome-c oxidase activity Catalysis of the reaction: 4 ferrocytochrome c + O2 + 4 H+ = 4 ferricytochrome c + 2 H2O.
GO:0009060 aerobic respiration The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:11123892 1 527 + 527 none 100.00 527 96.39 0.0 cox1 CusaM_p01 cytochrome c oxidase subunit 1
blastp_kegg lcl|vvi:7498537 1 527 + 527 none 100.00 527 95.64 0.0 cox1 ViviM_p036 cytochrome c oxidase subunit 1
blastp_kegg lcl|rcu:RCOM_Mp05 1 527 + 527 none 100.00 527 95.45 0.0 cox1 cytochrome c oxidase subunit 1
blastp_kegg lcl|gmx:15308534 1 527 + 527 none 100.00 527 95.64 0.0 cox1 GlmaxMp19 cytochrome c oxidase subunit 1
blastp_kegg lcl|mtr:MTR_1g006110 1 524 + 524 none 69.22 757 95.23 0.0 Cytochrome c oxidase subunit
blastp_kegg lcl|csv:101213920 30 527 + 498 none 100.00 498 96.99 0.0 cytochrome c oxidase subunit 1-like
blastp_kegg lcl|mdm:13630227 30 522 + 493 none 99.60 495 96.55 0.0 cox1 C3258_p27 cox1
blastp_kegg lcl|pda:11542590 1 527 + 527 none 100.00 527 94.31 0.0 cox1 DP_008 cytochrome c oxidase subunit 1
blastp_kegg lcl|ath:ArthMp109 1 527 + 527 none 100.00 527 93.74 0.0 cox1 cytochrome c oxidase subunit 1
blastp_kegg lcl|osa:6450122 1 524 + 524 none 100.00 524 93.51 0.0 cox1 OrsajM_p47 cytochrome c oxidase subunit1
blastp_pdb 3aso_N 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3aso_A 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3asn_N 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3asn_A 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3ag4_N 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3ag4_A 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3ag3_N 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3ag3_A 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3ag2_N 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_pdb 3ag2_A 6 515 + 510 Gaps:9 97.86 514 66.80 0.0 mol:protein length:514 Cytochrome c oxidase subunit 1
blastp_uniprot_sprot sp|P07506|COX1_SOYBN 1 527 + 527 none 100.00 527 95.45 0.0 Cytochrome c oxidase subunit 1 OS Glycine max GN COX1 PE 3 SV 2
blastp_uniprot_sprot sp|P08743|COX1_OENBE 1 527 + 527 none 100.00 527 94.31 0.0 Cytochrome c oxidase subunit 1 OS Oenothera berteroana GN COX1 PE 3 SV 2
blastp_uniprot_sprot sp|P12786|COX1_PEA 1 527 + 527 none 100.00 527 94.88 0.0 Cytochrome c oxidase subunit 1 OS Pisum sativum GN COX1 PE 3 SV 2
blastp_uniprot_sprot sp|P60621|COX1_RAPSA 1 527 + 527 none 100.00 527 93.74 0.0 Cytochrome c oxidase subunit 1 OS Raphanus sativus GN COX1 PE 3 SV 1
blastp_uniprot_sprot sp|P60620|COX1_ARATH 1 527 + 527 none 100.00 527 93.74 0.0 Cytochrome c oxidase subunit 1 OS Arabidopsis thaliana GN COX1 PE 3 SV 1
blastp_uniprot_sprot sp|P14578|COX1_ORYSJ 1 524 + 524 none 100.00 524 93.51 0.0 Cytochrome c oxidase subunit 1 OS Oryza sativa subsp. japonica GN COX1 PE 3 SV 2
blastp_uniprot_sprot sp|P05502|COX1_SORBI 1 530 + 530 none 100.00 530 92.08 0.0 Cytochrome c oxidase subunit 1 OS Sorghum bicolor GN COX1 PE 3 SV 2
blastp_uniprot_sprot sp|P24794|COX1_BETVU 1 524 + 524 none 100.00 524 93.51 0.0 Cytochrome c oxidase subunit 1 OS Beta vulgaris GN COX1 PE 3 SV 2
blastp_uniprot_sprot sp|P68539|COX1_WHEAT 1 524 + 524 none 100.00 524 92.75 0.0 Cytochrome c oxidase subunit 1 OS Triticum aestivum GN COX1 PE 3 SV 1
blastp_uniprot_sprot sp|P68540|COX1_AEGCO 1 524 + 524 none 100.00 524 92.75 0.0 Cytochrome c oxidase subunit 1 OS Aegilops columnaris GN COX1 PE 3 SV 1

46 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 454 476 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 13 462 450 PF00115 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome C and Quinol oxidase polypeptide I IPR000883
Phobius 84 100 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 44 54 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 233 257 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 101 111 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 186 213 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 20 43 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 6 521 516 PTHR10422:SF18 none none none
PANTHER 6 521 516 PTHR10422 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705";signature_desc=CYTOCHROME C OXIDASE SUBUNIT 1 none IPR000883
Phobius 373 393 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 414 434 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 329 339 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSitePatterns 239 293 55 PS00077 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Heme-copper oxidase catalytic subunit, copper B binding region signature. IPR023615
Phobius 305 328 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 5 520 516 SSF81442 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" none IPR023616
Phobius 362 372 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 214 232 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 1 520 520 PS50855 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome oxidase subunit I profile. IPR023616
Phobius 340 361 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 175 185 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 112 133 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 18 479 462 G3DSA:1.20.210.10 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" none IPR023616
Phobius 477 553 77 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 394 413 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 342 360 19 PR01165 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome c oxidase subunit I signature IPR000883
PRINTS 83 107 25 PR01165 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome c oxidase subunit I signature IPR000883
PRINTS 125 137 13 PR01165 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome c oxidase subunit I signature IPR000883
PRINTS 283 298 16 PR01165 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome c oxidase subunit I signature IPR000883
PRINTS 420 441 22 PR01165 "KEGG:00190+1.9.3.1","MetaCyc:PWY-3781","MetaCyc:PWY-4521","MetaCyc:PWY-6692","MetaCyc:PWY-7279","UniPathway:UPA00705" Cytochrome c oxidase subunit I signature IPR000883

12 Localization

Analysis Start End Length
TMHMM 448 467 19
TMHMM 103 125 22
TMHMM 305 327 22
TMHMM 268 290 22
TMHMM 339 361 22
TMHMM 16 38 22
TMHMM 239 261 22
TMHMM 60 82 22
TMHMM 145 167 22
TMHMM 187 209 22
TMHMM 411 433 22
TMHMM 376 398 22

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL7_Delta.F Qrob_Chr09 9 v_5944_442 s_1BA1PC_866 23.51 10,96 35,74 lod 4.1466 0.041
Bourran2_2003_QTL11_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 4,16 48,16 lod 2,3 5,1
Bourran2_2004_QTL12_peak_Bud_burst_3P Qrob_Chr09 9 s_1BDO6G_250 s_1A83AM_496 34,31 9,31 44,31 lod 3,6 7,6
Bourran2_2004_QTL14_peak_Bud_burst_A4 Qrob_Chr09 9 s_1BY6BQ_440 s_1AOIKO_756 16,83 10,33 22,33 lod 3,8 9
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
PM_1999_QTL15_peak_Bud_burst_3P Qrob_Chr09 9 s_1CGP2H_273 v_15801_330 27,16 9,16 47,16 lod 3,6 6,5
Bourran1_2003_QTL5_peak_Bud_burst_3P Qrob_Chr09 9 s_1ATM17_504 s_1AYZFM_899 29,81 19,81 41,81 lod 3,3 8,9

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 31   Secretory pathway 3 0.882 0.022 NON-PLANT 31