Protein : Qrob_P0123200.2 Q. robur
Protein Identifier  ? Qrob_P0123200.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 256  
Kegg Orthology  K10908
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0196710 1 255 + 255 none 43.29 589 89.02 4e-167 DNA-directed RNA polymerase 2B chloroplast/mitochondrial precursor putative
blastp_kegg lcl|pmum:103329599 1 255 + 255 none 24.90 1024 90.20 7e-165 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial
blastp_kegg lcl|vvi:100266898 1 255 + 255 none 24.64 1035 90.20 4e-164 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|pper:PRUPE_ppa000719mg 1 255 + 255 none 24.90 1024 89.41 6e-163 hypothetical protein
blastp_kegg lcl|mdm:103425949 24 255 + 232 none 97.89 237 92.24 2e-161 DNA-directed RNA polymerase 2A-like
blastp_kegg lcl|pxb:103962720 1 255 + 255 none 24.90 1024 88.63 3e-161 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial-like
blastp_kegg lcl|sly:101248533 1 255 + 255 none 24.95 1022 87.06 2e-160 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial-like
blastp_kegg lcl|tcc:TCM_011418 1 255 + 255 none 25.60 996 87.45 9e-160 DNA-directed RNA polymerase isoform 1
blastp_kegg lcl|pmum:103342004 1 255 + 255 none 25.35 1006 87.45 2e-159 DNA-directed RNA polymerase 1 mitochondrial
blastp_kegg lcl|pop:POPTR_0004s11050g 1 255 + 255 Gaps:1 46.52 546 85.83 2e-159 hypothetical protein
blastp_pdb 3spa_A 2 255 + 254 Gaps:23 23.19 1134 40.68 6e-54 mol:protein length:1134 DNA-directed RNA polymerase mitochondrial
blastp_pdb 1aro_P 15 254 + 240 Gaps:36 30.35 883 30.60 1e-24 mol:protein length:883 T7 RNA POLYMERASE
blastp_pdb 4rnp_C 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 RNA POLYMERASE
blastp_pdb 4rnp_B 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 RNA POLYMERASE
blastp_pdb 4rnp_A 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 RNA POLYMERASE
blastp_pdb 1s77_D 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 DNA-directed RNA polymerase
blastp_pdb 1s76_D 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 DNA-directed RNA polymerase
blastp_pdb 1s0v_D 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 DNA-directed RNA polymerase
blastp_pdb 1s0v_C 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 DNA-directed RNA polymerase
blastp_pdb 1s0v_B 15 254 + 240 Gaps:36 30.35 883 30.60 2e-24 mol:protein length:883 DNA-directed RNA polymerase
blastp_uniprot_sprot sp|Q8L6J2|RPO2A_TOBAC 1 255 + 255 none 76.81 332 87.06 3e-171 DNA-directed RNA polymerase 2A (Fragment) OS Nicotiana tabacum GN RPOT2-SYL PE 3 SV 1
blastp_uniprot_sprot sp|Q8L6J3|RPO2B_TOBAC 1 255 + 255 none 24.98 1021 87.45 1e-162 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial OS Nicotiana tabacum GN RPOT2-TOM PE 2 SV 2
blastp_uniprot_sprot sp|Q8VWF8|RPOT2_NICSY 1 255 + 255 none 25.00 1020 87.06 6e-162 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial OS Nicotiana sylvestris GN RPOT2 PE 2 SV 2
blastp_uniprot_sprot sp|Q8L6J5|RPO1B_TOBAC 1 255 + 255 none 25.45 1002 84.31 6e-154 DNA-directed RNA polymerase 1B mitochondrial OS Nicotiana tabacum GN RPOT1-TOM PE 2 SV 2
blastp_uniprot_sprot sp|Q93Y94|RPOT1_NICSY 1 255 + 255 none 25.45 1002 84.31 5e-153 DNA-directed RNA polymerase 1 mitochondrial OS Nicotiana sylvestris GN RPOT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LFV6|RPOT2_ARATH 1 255 + 255 none 25.22 1011 76.47 3e-140 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial OS Arabidopsis thaliana GN RPOT2 PE 1 SV 1
blastp_uniprot_sprot sp|P69242|RPOT3_NICSY 1 255 + 255 none 26.10 977 75.69 1e-137 DNA-directed RNA polymerase 3 chloroplastic OS Nicotiana sylvestris GN RPOT3 PE 2 SV 1
blastp_uniprot_sprot sp|P69243|RPO3A_TOBAC 1 255 + 255 none 26.10 977 75.69 1e-137 DNA-directed RNA polymerase 3A chloroplastic OS Nicotiana tabacum GN RPOT3-SYL PE 3 SV 1
blastp_uniprot_sprot sp|Q8L6J1|RPO3B_TOBAC 1 255 + 255 none 26.10 977 74.90 1e-137 DNA-directed RNA polymerase 3B chloroplastic OS Nicotiana tabacum GN RPOT3-TOM PE 2 SV 2
blastp_uniprot_sprot sp|P92969|RPOT1_ARATH 1 255 + 255 none 26.13 976 76.47 1e-137 DNA-directed RNA polymerase 1 mitochondrial OS Arabidopsis thaliana GN RPOT1 PE 2 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 3 255 253 SSF56672 none none none
PANTHER 1 255 255 PTHR10102 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6";signature_desc=DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL none IPR002092
Pfam 17 255 239 PF00940 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" DNA-dependent RNA polymerase IPR002092
ProSitePatterns 25 39 15 PS00489 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Bacteriophage-type RNA polymerase family active site signature 2. IPR002092
PANTHER 1 255 255 PTHR10102:SF1 none none none
Gene3D 10 162 153 G3DSA:1.10.150.20 none none none
Gene3D 163 244 82 G3DSA:3.30.70.370 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting