Protein : Qrob_P0123190.2 Q. robur
Protein Identifier  ? Qrob_P0123190.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=3) K10908 - DNA-directed RNA polymerase, mitochondrial [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 771  
Kegg Orthology  K10908
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100266898 1 770 + 770 Gaps:20 74.98 1035 78.09 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|cic:CICLE_v10010966mg 1 770 + 770 Gaps:39 82.64 933 75.23 0.0 hypothetical protein
blastp_kegg lcl|cit:102622473 1 770 + 770 Gaps:41 74.76 1026 75.10 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial-like
blastp_kegg lcl|pmum:103329599 1 770 + 770 Gaps:25 74.71 1024 74.90 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial
blastp_kegg lcl|pper:PRUPE_ppa000719mg 1 770 + 770 Gaps:25 74.71 1024 75.03 0.0 hypothetical protein
blastp_kegg lcl|mdm:103442459 1 770 + 770 Gaps:26 74.73 1025 73.37 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial
blastp_kegg lcl|pxb:103966797 1 770 + 770 Gaps:26 74.73 1025 73.11 0.0 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial
blastp_kegg lcl|sly:101248533 1 770 + 770 Gaps:29 74.66 1022 72.08 0.0 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial-like
blastp_kegg lcl|pxb:103962720 1 770 + 770 Gaps:25 74.71 1024 73.20 0.0 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial-like
blastp_kegg lcl|sot:102596586 1 770 + 770 Gaps:32 74.58 1019 72.37 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial-like
blastp_pdb 3spa_A 373 770 + 398 Gaps:18 35.10 1134 40.70 1e-86 mol:protein length:1134 DNA-directed RNA polymerase mitochondrial
blastp_pdb 3e3j_B 184 770 + 587 Gaps:82 59.73 889 31.64 2e-56 mol:protein length:889 DNA-directed RNA polymerase
blastp_pdb 3e3j_C 184 770 + 587 Gaps:82 59.73 889 31.64 2e-56 mol:protein length:889 DNA-directed RNA polymerase
blastp_pdb 3e2e_A 184 770 + 587 Gaps:82 59.73 889 31.64 2e-56 mol:protein length:889 DNA-directed RNA polymerase
blastp_pdb 1aro_P 184 770 + 587 Gaps:84 60.14 883 31.64 3e-56 mol:protein length:883 T7 RNA POLYMERASE
blastp_pdb 4rnp_C 184 770 + 587 Gaps:84 60.14 883 31.64 5e-56 mol:protein length:883 RNA POLYMERASE
blastp_pdb 4rnp_B 184 770 + 587 Gaps:84 60.14 883 31.64 5e-56 mol:protein length:883 RNA POLYMERASE
blastp_pdb 4rnp_A 184 770 + 587 Gaps:84 60.14 883 31.64 5e-56 mol:protein length:883 RNA POLYMERASE
blastp_pdb 1s77_D 184 770 + 587 Gaps:84 60.14 883 31.64 5e-56 mol:protein length:883 DNA-directed RNA polymerase
blastp_pdb 1s76_D 184 770 + 587 Gaps:84 60.14 883 31.64 5e-56 mol:protein length:883 DNA-directed RNA polymerase
blastp_uniprot_sprot sp|Q8L6J3|RPO2B_TOBAC 1 770 + 770 Gaps:20 74.63 1021 73.36 0.0 DNA-directed RNA polymerase 2B chloroplastic/mitochondrial OS Nicotiana tabacum GN RPOT2-TOM PE 2 SV 2
blastp_uniprot_sprot sp|Q8VWF8|RPOT2_NICSY 1 770 + 770 Gaps:19 74.61 1020 73.32 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial OS Nicotiana sylvestris GN RPOT2 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LFV6|RPOT2_ARATH 1 770 + 770 Gaps:30 74.38 1011 66.09 0.0 DNA-directed RNA polymerase 2 chloroplastic/mitochondrial OS Arabidopsis thaliana GN RPOT2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8L6J5|RPO1B_TOBAC 41 770 + 730 Gaps:51 74.15 1002 67.83 0.0 DNA-directed RNA polymerase 1B mitochondrial OS Nicotiana tabacum GN RPOT1-TOM PE 2 SV 2
blastp_uniprot_sprot sp|Q93Y94|RPOT1_NICSY 41 770 + 730 Gaps:47 74.15 1002 67.16 0.0 DNA-directed RNA polymerase 1 mitochondrial OS Nicotiana sylvestris GN RPOT1 PE 2 SV 1
blastp_uniprot_sprot sp|P92969|RPOT1_ARATH 41 770 + 730 Gaps:31 73.46 976 62.06 0.0 DNA-directed RNA polymerase 1 mitochondrial OS Arabidopsis thaliana GN RPOT1 PE 2 SV 1
blastp_uniprot_sprot sp|O24600|RPOT3_ARATH 182 770 + 589 Gaps:12 58.71 993 62.78 0.0 DNA-directed RNA polymerase 3 chloroplastic OS Arabidopsis thaliana GN RPOT3 PE 2 SV 1
blastp_uniprot_sprot sp|P69242|RPOT3_NICSY 196 770 + 575 Gaps:7 58.55 977 64.51 0.0 DNA-directed RNA polymerase 3 chloroplastic OS Nicotiana sylvestris GN RPOT3 PE 2 SV 1
blastp_uniprot_sprot sp|P69243|RPO3A_TOBAC 196 770 + 575 Gaps:7 58.55 977 64.51 0.0 DNA-directed RNA polymerase 3A chloroplastic OS Nicotiana tabacum GN RPOT3-SYL PE 3 SV 1
blastp_uniprot_sprot sp|Q8L6J1|RPO3B_TOBAC 196 770 + 575 Gaps:6 58.65 977 64.92 0.0 DNA-directed RNA polymerase 3B chloroplastic OS Nicotiana tabacum GN RPOT3-TOM PE 2 SV 2

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 726 737 12 PS00900 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" Bacteriophage-type RNA polymerase family active site signature 1. IPR002092
Gene3D 638 718 81 G3DSA:1.10.287.280 none none none
Gene3D 516 598 83 G3DSA:1.10.287.260 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" none IPR024075
Gene3D 721 748 28 G3DSA:3.30.70.370 none none none
Gene3D 608 637 30 G3DSA:3.30.70.370 none none none
Coils 155 176 22 Coil none none none
Pfam 638 768 131 PF00940 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" DNA-dependent RNA polymerase IPR002092
SUPERFAMILY 181 769 589 SSF56672 none none none
PANTHER 188 770 583 PTHR10102 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6";signature_desc=DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL none IPR002092
Gene3D 179 515 337 G3DSA:1.10.1320.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" none IPR029262
PANTHER 188 770 583 PTHR10102:SF1 none none none
Gene3D 749 769 21 G3DSA:1.10.150.20 none none none
Pfam 194 515 322 PF14700 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" DNA-directed RNA polymerase N-terminal IPR029262

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5

0 Targeting