Protein : Qrob_P0122520.2 Q. robur
Protein Identifier  ? Qrob_P0122520.2 Organism . Name  Quercus robur
Score  90.2 Score Type  egn
Protein Description  (M=2) PTHR13520 - RAD50-INTERACTING PROTEIN 1 (PROTEIN RINT-1) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 830  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005783 endoplasmic reticulum The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO:0048193 Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0009s02570g 17 821 + 805 Gaps:20 97.26 838 62.70 0.0 POPTRDRAFT_1088600 chromosome structural maintenance family protein
blastp_kegg lcl|fve:101309645 8 782 + 775 Gaps:18 99.49 783 64.31 0.0 uncharacterized protein LOC101309645
blastp_kegg lcl|pxb:103955567 11 780 + 770 Gaps:18 99.23 784 62.98 0.0 RAD50-interacting protein 1
blastp_kegg lcl|mdm:103436781 11 780 + 770 Gaps:18 99.23 784 62.72 0.0 uncharacterized LOC103436781
blastp_kegg lcl|rcu:RCOM_1395040 9 801 + 793 Gaps:32 97.59 829 61.31 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_016729 13 821 + 809 Gaps:28 98.31 829 60.98 0.0 RINT-1 / TIP-1 family putative
blastp_kegg lcl|pmum:103336738 5 778 + 774 Gaps:25 99.11 786 64.18 0.0 uncharacterized LOC103336738
blastp_kegg lcl|gmx:100818068 22 820 + 799 Gaps:29 97.60 832 62.81 0.0 uncharacterized LOC100818068
blastp_kegg lcl|cam:101494959 31 824 + 794 Gaps:24 97.22 827 61.07 0.0 uncharacterized LOC101494959
blastp_kegg lcl|vvi:100245683 18 822 + 805 Gaps:26 99.37 792 60.10 0.0 uncharacterized LOC100245683
blastp_uniprot_sprot sp|Q8BZ36|RINT1_MOUSE 219 779 + 561 Gaps:91 65.40 792 25.10 3e-17 RAD50-interacting protein 1 OS Mus musculus GN Rint1 PE 2 SV 2
blastp_uniprot_sprot sp|Q6NUQ1|RINT1_HUMAN 219 793 + 575 Gaps:91 67.17 792 25.00 6e-17 RAD50-interacting protein 1 OS Homo sapiens GN RINT1 PE 1 SV 1
rpsblast_cdd gnl|CDD|203012 304 820 + 517 Gaps:59 99.79 483 32.78 7e-94 pfam04437 RINT1_TIP1 RINT-1 / TIP-1 family. This family includes RINT-1 a Rad50 interacting protein which participates in radiation induced checkpoint control as well as the TIP-1 protein from yeast that seems to be involved in a complex with Sec20p that is required for golgi transport.
rpsblast_kog gnl|CDD|37429 17 823 + 807 Gaps:86 100.00 737 30.12 1e-111 KOG2218 KOG2218 KOG2218 ER to golgi transport protein/RAD50-interacting protein 1 [Intracellular trafficking secretion and vesicular transport Cell cycle control cell division chromosome partitioning].

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 174 826 653 PTHR13520:SF1 none none none
Coils 589 610 22 Coil none none none
ProSiteProfiles 216 829 614 PS51386 none RINT1/TIP20 domain profile. IPR007528
Pfam 304 818 515 PF04437 none RINT-1 / TIP-1 family IPR007528
PANTHER 19 155 137 PTHR13520:SF1 none none none
PANTHER 174 826 653 PTHR13520 none none none
PANTHER 19 155 137 PTHR13520 none none none

0 Localization

0 Qtllist

0 Targeting