Protein : Qrob_P0120820.2 Q. robur
Protein Identifier  ? Qrob_P0120820.2 Organism . Name  Quercus robur
Protein Description  (M=2) PTHR31384:SF1 - AUXIN RESPONSE FACTOR 12-RELATED (PTHR31384:SF1) Alias (in v1)  Qrob_P0668210.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 694  
Kegg Orthology  K14486
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

26 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_1311830 2 693 + 692 Gaps:18 99.71 694 77.89 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_016500 1 693 + 693 Gaps:12 99.86 698 74.61 0.0 Auxin response factor 9 isoform 1
blastp_kegg lcl|vvi:100247833 15 693 + 679 Gaps:41 99.28 693 72.67 0.0 auxin response factor 9-like
blastp_kegg lcl|cic:CICLE_v10019131mg 1 692 + 692 Gaps:21 99.86 690 73.15 0.0 hypothetical protein
blastp_kegg lcl|cit:102625615 1 692 + 692 Gaps:25 99.86 694 73.02 0.0 auxin response factor 9-like
blastp_kegg lcl|pmum:103337763 23 689 + 667 Gaps:11 98.97 681 73.15 0.0 auxin response factor 9
blastp_kegg lcl|pxb:103933897 23 689 + 667 Gaps:12 98.98 684 73.86 0.0 auxin response factor 9-like
blastp_kegg lcl|mdm:103404642 23 689 + 667 Gaps:11 98.98 683 73.67 0.0 auxin response factor 9
blastp_kegg lcl|pxb:103949259 23 689 + 667 Gaps:12 98.97 682 73.04 0.0 auxin response factor 9
blastp_kegg lcl|pper:PRUPE_ppa002617mg 23 689 + 667 Gaps:36 98.93 652 73.80 0.0 hypothetical protein
blastp_pdb 1wid_A 129 226 + 98 Gaps:2 76.92 130 32.00 1e-07 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|Q9XED8|ARFI_ARATH 1 674 + 674 Gaps:74 96.55 638 65.91 0.0 Auxin response factor 9 OS Arabidopsis thaliana GN ARF9 PE 1 SV 1
blastp_uniprot_sprot sp|Q6YVY0|ARFG_ORYSJ 22 676 + 655 Gaps:75 92.04 678 58.17 0.0 Auxin response factor 7 OS Oryza sativa subsp. japonica GN ARF7 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZPY6|ARFK_ARATH 13 690 + 678 Gaps:102 94.86 622 61.53 0.0 Auxin response factor 11 OS Arabidopsis thaliana GN ARF11 PE 2 SV 3
blastp_uniprot_sprot sp|Q0JCZ4|ARFI_ORYSJ 15 676 + 662 Gaps:52 93.91 673 57.44 0.0 Auxin response factor 9 OS Oryza sativa subsp. japonica GN ARF9 PE 2 SV 1
blastp_uniprot_sprot sp|Q8L7G0|ARFA_ARATH 18 678 + 661 Gaps:79 94.44 665 56.69 0.0 Auxin response factor 1 OS Arabidopsis thaliana GN ARF1 PE 1 SV 2
blastp_uniprot_sprot sp|Q5NB85|ARFA_ORYSJ 14 674 + 661 Gaps:72 97.42 699 49.19 0.0 Auxin response factor 1 OS Oryza sativa subsp. japonica GN ARF1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LQE8|ARFN_ARATH 24 674 + 651 Gaps:83 95.87 605 50.86 0.0 Putative auxin response factor 14 OS Arabidopsis thaliana GN ARF14 PE 3 SV 2
blastp_uniprot_sprot sp|Q9C8N7|ARFV_ARATH 24 659 + 636 Gaps:84 94.31 598 53.90 0.0 Auxin response factor 22 OS Arabidopsis thaliana GN ARF22 PE 2 SV 2
blastp_uniprot_sprot sp|Q9C8N9|ARFU_ARATH 24 666 + 643 Gaps:90 94.55 606 51.66 0.0 Putative auxin response factor 21 OS Arabidopsis thaliana GN ARF21 PE 3 SV 2
blastp_uniprot_sprot sp|Q9C5W9|ARFR_ARATH 21 693 + 673 Gaps:43 89.87 602 63.59 0.0 Auxin response factor 18 OS Arabidopsis thaliana GN ARF18 PE 2 SV 1
rpsblast_cdd gnl|CDD|202200 526 670 + 145 Gaps:22 79.26 188 29.53 5e-28 pfam02309 AUX_IAA AUX/IAA family. Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain.
rpsblast_cdd gnl|CDD|191545 255 334 + 80 Gaps:3 100.00 83 56.63 6e-28 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 129 229 + 101 Gaps:6 97.94 97 41.05 1e-22 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 129 229 + 101 Gaps:6 98.96 96 37.89 8e-20 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 127 229 + 103 Gaps:7 100.00 98 36.73 1e-16 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 120 258 139 SSF101936 none none IPR015300
SUPERFAMILY 587 657 71 SSF54277 none none none
Pfam 129 229 101 PF02362 none B3 DNA binding domain IPR003340
ProSiteProfiles 129 231 103 PS50863 none B3 DNA-binding domain profile. IPR003340
PANTHER 2 682 681 PTHR31384:SF1 none none none
Pfam 541 670 130 PF02309 none AUX/IAA family IPR003311
Pfam 255 334 80 PF06507 none Auxin response factor IPR010525
PANTHER 2 682 681 PTHR31384 none none none
Gene3D 121 244 124 G3DSA:2.40.330.10 none none IPR015300
ProSiteProfiles 581 662 82 PS51745 none PB1 domain profile. IPR000270
SMART 129 231 103 SM01019 none B3 DNA binding domain IPR003340

0 Localization

17 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7

0 Targeting