Protein : Qrob_P0120420.2 Q. robur
Protein Identifier  ? Qrob_P0120420.2 Organism . Name  Quercus robur
Score  94.0 Score Type  egn
Protein Description  (M=1) PF02163 - Peptidase family M50 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 193  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0004222 metalloendopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO:0006508 proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

12 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025846 13 192 + 180 Gaps:23 36.31 559 80.30 6e-103 Peptidase M50 family protein isoform 1
blastp_kegg lcl|eus:EUTSA_v10003446mg 13 192 + 180 Gaps:23 35.74 568 78.33 9e-101 hypothetical protein
blastp_kegg lcl|ath:AT5G35220 13 192 + 180 Gaps:23 37.04 548 78.33 3e-100 EGY1 metalloprotease EGY1
blastp_kegg lcl|aly:ARALYDRAFT_493599 13 192 + 180 Gaps:23 36.91 550 78.33 5e-100 EGY1 ethylene-dependent gravitropism-deficient and yellow-green 1
blastp_kegg lcl|brp:103868292 13 192 + 180 Gaps:23 36.06 563 77.83 1e-98 probable zinc metalloprotease EGY1 chloroplastic
blastp_kegg lcl|pop:POPTR_0013s06090g 13 192 + 180 Gaps:23 36.12 562 77.83 8e-98 POPTRDRAFT_773851 hypothetical protein
blastp_kegg lcl|cmo:103486011 13 192 + 180 Gaps:23 36.25 560 77.83 2e-97 probable zinc metalloprotease EGY1 chloroplastic
blastp_kegg lcl|cic:CICLE_v10019476mg 13 192 + 180 Gaps:23 35.24 576 77.34 7e-97 hypothetical protein
blastp_kegg lcl|cit:102611982 13 192 + 180 Gaps:23 35.24 576 77.34 7e-97 uncharacterized LOC102611982
blastp_kegg lcl|vvi:100253507 13 192 + 180 Gaps:23 37.18 546 78.33 2e-96 uncharacterized LOC100253507
rpsblast_cdd gnl|CDD|202134 18 124 + 107 Gaps:6 49.03 206 28.71 5e-08 pfam02163 Peptidase_M50 Peptidase family M50.
rpsblast_cdd gnl|CDD|100081 13 123 + 111 Gaps:49 33.88 183 46.77 8e-08 cd06160 S2P-M50_like_2 Uncharacterized homologs of Site-2 protease (S2P) zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation cell division stress response and cell differentiation. This group includes bacterial eukaryotic and Archaeal S2P/M50s homologs with additional putative N- and C-terminal transmembrane spanning regions relative to the core protein and no PDZ domains..

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 28 48 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 27 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 49 159 111 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 178 192 15 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 160 177 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 13 192 180 PTHR31412:SF3 none none none
Pfam 19 123 105 PF02163 none Peptidase family M50 IPR008915
PANTHER 13 192 180 PTHR31412 none none none

5 Localization

Analysis Start End Length
TMHMM 121 139 18
TMHMM 160 177 17
TMHMM 92 111 19
TMHMM 63 85 22
TMHMM 26 48 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting