Protein : Qrob_P0120320.2 Q. robur
Protein Identifier  ? Qrob_P0120320.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K02634 - apocytochrome f Gene Prediction Quality  validated
Protein length 

Sequence

Length: 354  
Kegg Orthology  K02634
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0015979 photosynthesis The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
GO:0005506 iron ion binding Interacting selectively and non-covalently with iron (Fe) ions.
GO:0020037 heme binding Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
GO:0009055 electron carrier activity Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
GO:0031361 integral component of thylakoid membrane The component of the thylakoid membrane consisting of the gene products having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

33 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mtr:MetrCp045 1 283 + 283 Gaps:39 98.75 320 75.00 3e-156 petA cytochrome f
blastp_kegg lcl|vvi:7498572 1 283 + 283 Gaps:39 98.75 320 74.68 3e-155 petA ViviM_p006 cytochrome f
blastp_kegg lcl|vvi:4025050 1 283 + 283 Gaps:39 98.75 320 74.68 3e-155 petA ViviCp034 apocytochrome f precursor
blastp_kegg lcl|mtr:MTR_4g050860 1 283 + 283 Gaps:21 39.68 751 79.53 8e-155 Apocytochrome F
blastp_kegg lcl|pper:PrpeC_p034 1 283 + 283 Gaps:39 98.75 320 74.37 2e-153 petA cytochrome f
blastp_kegg lcl|pmum:18668044 1 283 + 283 Gaps:39 98.75 320 74.37 2e-153 petA CP95_p054 cytochrome f
blastp_kegg lcl|cam:6797477 1 283 + 283 Gaps:39 98.75 320 73.10 5e-153 petA CiarC_p032 cytochrome f
blastp_kegg lcl|rcu:RCOM_ORF00056 1 283 + 283 Gaps:39 98.75 320 73.42 9e-153 petA cytochrome f
blastp_kegg lcl|atr:s00334p00011840 1 283 + 283 Gaps:39 98.75 320 74.05 9e-153 AMTR_s00334p00011840 hypothetical protein
blastp_kegg lcl|tcc:ThcaC_p033 1 283 + 283 Gaps:39 98.75 320 73.10 5e-152 petA cytochrome f
blastp_pdb 1tkw_B 37 254 + 218 Gaps:38 100.00 252 70.24 1e-110 mol:protein length:252 Cytochrome f
blastp_pdb 1hcz_A 37 254 + 218 Gaps:38 100.00 252 70.24 1e-110 mol:protein length:252 CYTOCHROME F
blastp_pdb 2pcf_B 37 252 + 216 Gaps:38 100.00 250 70.00 3e-109 mol:protein length:250 CYTOCHROME F
blastp_pdb 1ctm_A 37 252 + 216 Gaps:38 100.00 250 70.00 3e-109 mol:protein length:250 CYTOCHROME F
blastp_pdb 1q90_A 37 282 + 246 Gaps:39 96.23 292 54.80 1e-92 mol:protein length:292 Apocytochrome f
blastp_pdb 1ewh_C 37 252 + 216 Gaps:39 100.00 251 54.58 2e-84 mol:protein length:251 CYTOCHROME F
blastp_pdb 1ewh_B 37 252 + 216 Gaps:39 100.00 251 54.58 2e-84 mol:protein length:251 CYTOCHROME F
blastp_pdb 1ewh_A 37 252 + 216 Gaps:39 100.00 251 54.58 2e-84 mol:protein length:251 CYTOCHROME F
blastp_pdb 1cfm_C 37 252 + 216 Gaps:39 100.00 251 54.58 2e-84 mol:protein length:251 CYTOCHROME F
blastp_pdb 1cfm_B 37 252 + 216 Gaps:39 100.00 251 54.58 2e-84 mol:protein length:251 CYTOCHROME F
blastp_uniprot_sprot sp|Q0ZJ07|CYF_VITVI 1 283 + 283 Gaps:39 98.75 320 74.68 1e-156 Apocytochrome f OS Vitis vinifera GN petA PE 3 SV 1
blastp_uniprot_sprot sp|Q2QD76|CYF_CUCSA 1 283 + 283 Gaps:39 98.75 320 75.00 3e-156 Apocytochrome f OS Cucumis sativus GN petA PE 3 SV 1
blastp_uniprot_sprot sp|B1NWG3|CYF_MANES 1 283 + 283 Gaps:39 98.75 320 73.73 4e-154 Apocytochrome f OS Manihot esculenta GN petA PE 3 SV 1
blastp_uniprot_sprot sp|P06669|CYF_VICFA 1 283 + 283 Gaps:39 98.75 320 73.42 9e-154 Apocytochrome f OS Vicia faba GN petA PE 1 SV 1
blastp_uniprot_sprot sp|Q2L921|CYF_GOSHI 1 283 + 283 Gaps:39 98.75 320 73.42 1e-153 Apocytochrome f OS Gossypium hirsutum GN petA PE 3 SV 1
blastp_uniprot_sprot sp|A0ZZ48|CYF_GOSBA 1 283 + 283 Gaps:39 98.75 320 73.42 2e-153 Apocytochrome f OS Gossypium barbadense GN petA PE 3 SV 1
blastp_uniprot_sprot sp|Q09G33|CYF_PLAOC 1 283 + 283 Gaps:39 98.75 320 73.10 2e-153 Apocytochrome f OS Platanus occidentalis GN petA PE 3 SV 1
blastp_uniprot_sprot sp|B1A948|CYF_CARPA 1 283 + 283 Gaps:39 98.75 320 73.73 2e-153 Apocytochrome f OS Carica papaya GN petA PE 3 SV 1
blastp_uniprot_sprot sp|Q09X04|CYF_MORIN 1 283 + 283 Gaps:39 98.75 320 73.73 3e-153 Apocytochrome f OS Morus indica GN petA PE 3 SV 1
blastp_uniprot_sprot sp|Q1KXU6|CYF_HELAN 1 283 + 283 Gaps:39 98.75 320 72.78 4e-153 Apocytochrome f OS Helianthus annuus GN petA PE 3 SV 1

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 273 353 81 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PRINTS 45 64 20 PR00610 none Cytochrome F signature IPR002325
PRINTS 32 43 12 PR00610 none Cytochrome F signature IPR002325
PRINTS 65 85 21 PR00610 none Cytochrome F signature IPR002325
SUPERFAMILY 37 188 152 SSF49441 none none IPR024094
SUPERFAMILY 233 252 20 SSF49441 none none IPR024094
Gene3D 253 280 28 G3DSA:1.20.5.700 none none IPR024058
Phobius 253 272 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 20 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 194 282 89 PF01333 none Apocytochrome F, C-terminal IPR002325
Gene3D 197 230 34 G3DSA:2.40.50.100 none none none
SUPERFAMILY 249 283 35 SSF103431 none none IPR024058
SUPERFAMILY 194 233 40 SSF51246 none none IPR011054
Phobius 41 252 212 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 21 40 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 37 84 48 G3DSA:2.60.40.830 none none IPR024094
Gene3D 231 252 22 G3DSA:2.60.40.830 none none IPR024094
Gene3D 85 187 103 G3DSA:2.60.40.830 none none IPR024094
ProSiteProfiles 36 294 259 PS51010 none Cytochrome f family profile. IPR002325

2 Localization

Analysis Start End Length
TMHMM 253 272 19
TMHMM 19 41 22

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting