Protein : Qrob_P0120020.2 Q. robur
Protein Identifier  ? Qrob_P0120020.2 Organism . Name  Quercus robur
Score  96.0 Score Type  egn
Protein Description  (M=1) PTHR19845//PTHR19845:SF0 - KATANIN P80 SUBUNIT // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 657  
Kegg Orthology  K18643
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0008017 microtubule binding Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
GO:0008352 katanin complex A complex possessing an activity that couples ATP hydrolysis to the severing of microtubules; usually a heterodimer comprising a catalytic subunit (often 60kDa) and a regulatory subunit (often 80 kDa).
GO:0051013 microtubule severing The process in which a microtubule is broken down into smaller segments.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:103321127 5 624 + 620 Gaps:25 75.34 803 74.05 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|pper:PRUPE_ppa001553mg 5 624 + 620 Gaps:25 75.34 803 73.72 0.0 hypothetical protein
blastp_kegg lcl|mdm:103403376 5 624 + 620 Gaps:25 75.34 803 72.40 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|cit:102610343 5 624 + 620 Gaps:47 75.82 819 70.05 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|pop:POPTR_0008s00290g 15 624 + 610 Gaps:24 73.82 802 70.78 0.0 POPTRDRAFT_803047 hypothetical protein
blastp_kegg lcl|pxb:103943244 5 624 + 620 Gaps:25 75.34 803 72.40 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|vvi:100262947 15 624 + 610 Gaps:28 73.75 800 72.20 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog 1-like
blastp_kegg lcl|cic:CICLE_v10014294mg 5 624 + 620 Gaps:47 75.92 818 69.24 0.0 hypothetical protein
blastp_kegg lcl|mdm:103452201 16 624 + 609 Gaps:20 90.48 651 71.82 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_kegg lcl|fve:101302644 5 624 + 620 Gaps:33 75.09 795 71.19 0.0 katanin p80 WD40 repeat-containing subunit B1 homolog
blastp_uniprot_sprot sp|Q8H0T9|KTNB1_ARATH 15 641 + 627 Gaps:67 76.94 837 52.17 0.0 Katanin p80 WD40 repeat-containing subunit B1 homolog OS Arabidopsis thaliana GN At5g23430 PE 2 SV 3
blastp_uniprot_sprot sp|O61585|KTNB1_STRPU 14 610 + 597 Gaps:50 59.28 690 31.78 5e-26 Katanin p80 WD40 repeat-containing subunit B1 OS Strongylocentrotus purpuratus GN KATNB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q4V7Y7|KTNB1_XENLA 14 610 + 597 Gaps:64 65.34 655 35.51 5e-25 Katanin p80 WD40 repeat-containing subunit B1 OS Xenopus laevis GN katnb1 PE 1 SV 1
blastp_uniprot_sprot sp|Q6NVM2|KTNB1_XENTR 14 610 + 597 Gaps:64 65.34 655 35.28 1e-24 Katanin p80 WD40 repeat-containing subunit B1 OS Xenopus tropicalis GN katnb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q5ZIU8|KTNB1_CHICK 22 613 + 592 Gaps:28 45.21 657 35.69 5e-24 Katanin p80 WD40 repeat-containing subunit B1 OS Gallus gallus GN KATNB1 PE 2 SV 2
blastp_uniprot_sprot sp|Q7ZUV2|KTNB1_DANRE 14 613 + 600 Gaps:22 36.60 694 40.55 8e-24 Katanin p80 WD40 repeat-containing subunit B1 OS Danio rerio GN katnb1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9BVA0|KTNB1_HUMAN 14 613 + 600 Gaps:24 44.43 655 35.40 3e-21 Katanin p80 WD40 repeat-containing subunit B1 OS Homo sapiens GN KATNB1 PE 1 SV 1
blastp_uniprot_sprot sp|Q8BG40|KTNB1_MOUSE 14 613 + 600 Gaps:32 46.05 658 34.98 5e-20 Katanin p80 WD40 repeat-containing subunit B1 OS Mus musculus GN Katnb1 PE 1 SV 1
rpsblast_cdd gnl|CDD|206096 460 622 + 163 Gaps:22 89.63 164 42.86 4e-39 pfam13925 Katanin_con80 con80 domain of Katanin. The con80 domain of katanin is the C-terminal region of the protein that binds to the N-terminal domain of katanin-p60 the catalytic ATPase. The complex associates with a specific subregion of the mitotic spindle leading to increased microtubule disassembly and targeting of p60 to the spindle poles. The assembly and function of the mitotic spindle requires the activity of a number of microtubule-binding proteins. Katanin a heterodimeric microtubule-severing ATPase is found localized at mitotic spindle poles. A proposed model is that katanin is targeted to spindle poles through a combination of direct microtubule binding by the p60 subunit and through interactions between the WD40 domain and an unknown protein.
rpsblast_kog gnl|CDD|35488 22 622 + 601 Gaps:55 70.06 825 33.22 7e-93 KOG0267 KOG0267 KOG0267 Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control cell division chromosome partitioning].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 22 119 98 SSF50978 none none IPR017986
PANTHER 560 621 62 PTHR19845:SF0 none none IPR026962
ProSiteProfiles 22 41 20 PS50082 none Trp-Asp (WD) repeats profile. IPR001680
Pfam 460 544 85 PF13925 none con80 domain of Katanin IPR028021
Pfam 560 621 62 PF13925 none con80 domain of Katanin IPR028021
PANTHER 22 540 519 PTHR19845:SF0 none none IPR026962
Gene3D 22 137 116 G3DSA:2.130.10.10 none none IPR015943
PANTHER 560 621 62 PTHR19845 none none none
PANTHER 22 540 519 PTHR19845 none none none

0 Localization

13 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nEpis*_A4 Qrob_Chr07 7 v_12400_446 s_1BPEBU_1211 6,93 0 15,13 lod 4,7411 11
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran2_2002_QTL10_peak_Bud_burst_3P Qrob_Chr07 7 s_1CAWP_311 s_1BEZ9M_461 7,5 0 21,5 lod 3,7 6,3
Bourran2_2014_nPriBD*_A4 Qrob_Chr07 7 s_1A7UI0_596 s_1A3H6S_352 8,02 0 20,53 lod 4,1062 10,8
Bourran2_2014_nPriLBD*_A4 Qrob_Chr07 7 s_1C6BY7_802 s_1BPEBU_1211 7,15 0 16,34 lod 3,9419 10,2

0 Targeting