Protein : Qrob_P0118380.2 Q. robur
Protein Identifier  ? Qrob_P0118380.2 Organism . Name  Quercus robur
Score  34.1 Score Type  egn
Protein Description  (M=2) K08495 - golgi SNAP receptor complex member 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 79  
Kegg Orthology  K08495
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0000139 Golgi membrane The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
GO:0006888 ER to Golgi vesicle-mediated transport The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
GO:0005801 cis-Golgi network The network of interconnected tubular and cisternal structures located at the convex side of the Golgi apparatus, which abuts the endoplasmic reticulum.

20 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_027409 3 78 + 76 none 33.93 224 92.11 2e-41 Golgi SNARE 11 protein isoform 2
blastp_kegg lcl|rcu:RCOM_0470970 3 78 + 76 none 30.04 253 92.11 1e-40 golgi snare 11 protein putative
blastp_kegg lcl|pop:POPTR_0003s17920g 3 78 + 76 none 33.33 228 90.79 3e-40 POPTRDRAFT_554868 Golgi SNARE 11 family protein
blastp_kegg lcl|brp:103842875 3 78 + 76 none 33.93 224 89.47 7e-40 Golgi SNAP receptor complex member 1-1
blastp_kegg lcl|pop:POPTR_0001s14820g 3 78 + 76 none 33.63 226 88.16 1e-39 POPTRDRAFT_708590 Golgi SNARE 11 family protein
blastp_kegg lcl|cmo:103494652 3 78 + 76 none 33.33 228 88.16 1e-39 Golgi SNAP receptor complex member 1-1
blastp_kegg lcl|csv:101230028 3 78 + 76 none 33.33 228 88.16 1e-39 Golgi SNAP receptor complex member 1-1-like
blastp_kegg lcl|csv:101207624 3 78 + 76 none 33.33 228 88.16 1e-39 Golgi SNAP receptor complex member 1-1-like
blastp_kegg lcl|fve:101304890 3 78 + 76 none 34.08 223 89.47 1e-39 Golgi SNAP receptor complex member 1-1-like
blastp_kegg lcl|crb:CARUB_v10010239mg 3 78 + 76 none 34.08 223 88.16 2e-39 hypothetical protein
blastp_uniprot_sprot sp|Q9LMP7|GOS11_ARATH 3 78 + 76 none 34.08 223 86.84 2e-40 Golgi SNAP receptor complex member 1-1 OS Arabidopsis thaliana GN GOS11 PE 2 SV 1
blastp_uniprot_sprot sp|O22151|GOS12_ARATH 3 78 + 76 none 29.57 257 44.74 3e-16 Golgi SNAP receptor complex member 1-2 OS Arabidopsis thaliana GN GOS12 PE 1 SV 2
blastp_uniprot_sprot sp|O88630|GOSR1_MOUSE 4 74 + 71 none 28.40 250 30.99 2e-06 Golgi SNAP receptor complex member 1 OS Mus musculus GN Gosr1 PE 1 SV 2
blastp_uniprot_sprot sp|Q62931|GOSR1_RAT 4 74 + 71 none 28.40 250 30.99 2e-06 Golgi SNAP receptor complex member 1 OS Rattus norvegicus GN Gosr1 PE 1 SV 1
blastp_uniprot_sprot sp|O08522|GOSR1_CRIGR 4 74 + 71 none 28.40 250 30.99 3e-06 Golgi SNAP receptor complex member 1 OS Cricetulus griseus GN GOSR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q2TBU3|GOSR1_BOVIN 4 74 + 71 none 28.40 250 32.39 3e-06 Golgi SNAP receptor complex member 1 OS Bos taurus GN GOSR1 PE 2 SV 1
blastp_uniprot_sprot sp|O95249|GOSR1_HUMAN 4 74 + 71 none 28.40 250 30.99 3e-06 Golgi SNAP receptor complex member 1 OS Homo sapiens GN GOSR1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RBL6|GOSR1_PONAB 4 74 + 71 none 28.63 248 30.99 3e-06 Golgi SNAP receptor complex member 1 OS Pongo abelii GN GOSR1 PE 2 SV 1
rpsblast_cdd gnl|CDD|152787 3 53 + 51 none 77.27 66 37.25 5e-08 pfam12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus. Within the SNARE proteins interactions in the C-terminal half of the SNARE helix are critical to the driving of membrane fusion whereas interactions in the N-terminal half of the SNARE domain are important for promoting priming or docking of the vesicle pfam05008.
rpsblast_kog gnl|CDD|38418 3 77 + 75 none 32.47 231 46.67 1e-20 KOG3208 KOG3208 KOG3208 SNARE protein GS28 [Intracellular trafficking secretion and vesicular transport].

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 3 77 75 PTHR21094 none none IPR023601
Pfam 3 53 51 PF12352 none Snare region anchored in the vesicle membrane C-terminus none
Phobius 1 56 56 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 3 77 75 PTHR21094:SF1 none none none
Phobius 77 78 2 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 57 76 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

1 Localization

Analysis Start End Length
TMHMM 58 77 19

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2004_QTL5_peak_Bud_burst_A4 Qrob_Chr10 10 s_1C8OKQ_688 v_12844_707 25,6 13,9 39,9 lod 2,7 6,1
Bourran2_2002_QTL13_peak_Bud_burst_3P Qrob_Chr10 10 s_1B1AG7_637 s_1A3A1N_709 19,44 0 49,44 lod 3 5,6
Bourran2_2014_vSeqBC_A4 Qrob_Chr10 10 s_1BAM4E_1326 s_1C0HD0_1012 36,88 7,71 46,03 lod 2,6164 7,3
Champenoux_2015_nPriLBD_3P Qrob_Chr10 10 v_15000_157 v_15000_310 15,68 15,9 15,91 lod 2.4 5.5

0 Targeting