Protein : Qrob_P0116960.2 Q. robur
Protein Identifier  ? Qrob_P0116960.2 Organism . Name  Quercus robur
Score  22.4 Score Type  egn
Protein Description  (M=1) PTHR11476:SF1 - HISTIDYL-TRNA SYNTHETASE Code Enzyme  EC:6.1.1.21
Gene Prediction Quality  validated Protein length 

Sequence

Length: 879  
Kegg Orthology  K01892
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0004812 aminoacyl-tRNA ligase activity Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO:0006418 tRNA aminoacylation for protein translation The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO:0004821 histidine-tRNA ligase activity Catalysis of the reaction: ATP + L-histidine + tRNA(His) = AMP + diphosphate + L-histidyl-tRNA(His).
GO:0006427 histidyl-tRNA aminoacylation The process of coupling histidine to histidyl-tRNA, catalyzed by histidyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241489 10 878 + 869 Gaps:28 98.76 890 71.67 0.0 histidyl-tRNA synthetase-like
blastp_kegg lcl|cic:CICLE_v10018820mg 10 877 + 868 Gaps:20 99.08 866 72.14 0.0 hypothetical protein
blastp_kegg lcl|pmum:103336485 7 877 + 871 Gaps:25 99.77 874 72.94 0.0 histidine--tRNA ligase
blastp_kegg lcl|cit:102629391 10 877 + 868 Gaps:20 99.08 866 71.91 0.0 histidine--tRNA ligase-like
blastp_kegg lcl|pxb:103956558 7 877 + 871 Gaps:36 99.66 878 70.63 0.0 histidine--tRNA ligase
blastp_kegg lcl|csv:101221612 7 878 + 872 Gaps:23 99.54 879 68.23 0.0 histidine--tRNA ligase-like
blastp_kegg lcl|fve:101304051 25 877 + 853 Gaps:29 97.72 878 69.58 0.0 histidine--tRNA ligase-like
blastp_kegg lcl|cmo:103485391 8 878 + 871 Gaps:23 93.18 938 68.08 0.0 histidine--tRNA ligase
blastp_kegg lcl|mdm:103425220 72 877 + 806 Gaps:22 99.14 817 71.85 0.0 histidine--tRNA ligase
blastp_kegg lcl|rcu:RCOM_0741740 8 876 + 869 Gaps:25 98.65 886 67.28 0.0 histidyl-tRNA synthetase putative (EC:6.1.1.21)
blastp_pdb 3net_B 446 877 + 432 Gaps:27 96.99 465 31.04 5e-55 mol:protein length:465 Histidyl-tRNA synthetase
blastp_pdb 3net_A 446 877 + 432 Gaps:27 96.99 465 31.04 5e-55 mol:protein length:465 Histidyl-tRNA synthetase
blastp_pdb 1wu7_B 447 872 + 426 Gaps:30 94.93 434 29.61 8e-36 mol:protein length:434 Histidyl-tRNA synthetase
blastp_pdb 1wu7_A 447 872 + 426 Gaps:30 94.93 434 29.61 8e-36 mol:protein length:434 Histidyl-tRNA synthetase
blastp_pdb 3hri_F 447 762 + 316 Gaps:21 67.76 456 31.07 1e-35 mol:protein length:456 Histidyl-tRNA synthetase
blastp_pdb 3hri_E 447 762 + 316 Gaps:21 67.76 456 31.07 1e-35 mol:protein length:456 Histidyl-tRNA synthetase
blastp_pdb 3hri_D 447 762 + 316 Gaps:21 67.76 456 31.07 1e-35 mol:protein length:456 Histidyl-tRNA synthetase
blastp_pdb 3hri_C 447 762 + 316 Gaps:21 67.76 456 31.07 1e-35 mol:protein length:456 Histidyl-tRNA synthetase
blastp_pdb 3hri_B 447 762 + 316 Gaps:21 67.76 456 31.07 1e-35 mol:protein length:456 Histidyl-tRNA synthetase
blastp_pdb 3hri_A 447 762 + 316 Gaps:21 67.76 456 31.07 1e-35 mol:protein length:456 Histidyl-tRNA synthetase
blastp_uniprot_sprot sp|P93422|SYH_ORYSJ 127 878 + 752 Gaps:42 97.72 788 55.45 0.0 Histidine--tRNA ligase OS Oryza sativa subsp. japonica GN Os05g0150900 PE 2 SV 2
blastp_uniprot_sprot sp|Q86AS6|SYHC_DICDI 444 877 + 434 Gaps:6 91.06 481 53.20 6e-157 Histidine--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN hisS PE 3 SV 1
blastp_uniprot_sprot sp|Q2KI84|SYHC_BOVIN 444 875 + 432 Gaps:17 87.43 509 53.93 1e-154 Histidine--tRNA ligase cytoplasmic OS Bos taurus GN HARS PE 2 SV 1
blastp_uniprot_sprot sp|Q61035|SYHC_MOUSE 444 877 + 434 Gaps:17 87.82 509 53.69 3e-154 Histidine--tRNA ligase cytoplasmic OS Mus musculus GN Hars PE 2 SV 2
blastp_uniprot_sprot sp|P70076|SYHC_TAKRU 444 875 + 432 Gaps:27 87.67 519 51.65 1e-153 Histidine--tRNA ligase cytoplasmic OS Takifugu rubripes GN hars PE 3 SV 1
blastp_uniprot_sprot sp|P12081|SYHC_HUMAN 427 875 + 449 Gaps:19 91.16 509 53.23 2e-153 Histidine--tRNA ligase cytoplasmic OS Homo sapiens GN HARS PE 1 SV 2
blastp_uniprot_sprot sp|Q5R4R2|SYHC_PONAB 427 875 + 449 Gaps:19 91.16 509 53.23 2e-153 Histidine--tRNA ligase cytoplasmic OS Pongo abelii GN HARS PE 2 SV 1
blastp_uniprot_sprot sp|Q5R5E5|SYHM_PONAB 444 877 + 434 Gaps:19 88.34 506 49.44 8e-141 Probable histidine--tRNA ligase mitochondrial OS Pongo abelii GN HARS2 PE 2 SV 1
blastp_uniprot_sprot sp|P49590|SYHM_HUMAN 444 877 + 434 Gaps:19 88.34 506 48.99 2e-139 Probable histidine--tRNA ligase mitochondrial OS Homo sapiens GN HARS2 PE 1 SV 1
blastp_uniprot_sprot sp|P07178|SYHC_MESAU 427 877 + 451 Gaps:18 91.54 508 48.39 2e-137 Histidine--tRNA ligase cytoplasmic OS Mesocricetus auratus GN HARS PE 2 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 419 877 459 PTHR11476 "Reactome:REACT_71";signature_desc=HISTIDYL-TRNA SYNTHETASE none IPR004516
Gene3D 134 235 102 G3DSA:1.20.200.10 none none none
Hamap 441 874 434 MF_00127 "KEGG:00970+6.1.1.21","Reactome:REACT_71" Histidine--tRNA ligase [hisS]. IPR015807
ProSiteProfiles 424 781 358 PS50862 "Reactome:REACT_71" Aminoacyl-transfer RNA synthetases class-II family profile. IPR006195
Pfam 448 766 319 PF13393 none Histidyl-tRNA synthetase none
PANTHER 419 877 459 PTHR11476:SF1 none none none
Gene3D 783 873 91 G3DSA:3.40.50.800 none none IPR004154
Gene3D 684 775 92 G3DSA:3.30.930.10 none none none
Gene3D 443 628 186 G3DSA:3.30.930.10 none none none
TIGRFAM 445 864 420 TIGR00442 "KEGG:00970+6.1.1.21","Reactome:REACT_71" hisS: histidine--tRNA ligase IPR015807
Pfam 790 874 85 PF03129 none Anticodon binding domain IPR004154
SUPERFAMILY 444 771 328 SSF55681 none none none
SUPERFAMILY 786 876 91 SSF52954 none none IPR004154

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL8_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BXT7R_864 29.91 0 47,18 lod 7.0997 0.044
Bourran_2000_2002_QTL4_Delta.F Qrob_Chr09 9 s_1C1GRV_1289 v_12080_1202 2.56 0 13,73 lod 7.4808 0.051
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL4_d13Cf Qrob_Chr09 9 s_1C1GRV_1289 s_1BOL3D_361 2.56 0 12,57 lod 6.9263 0.028

0 Targeting