Protein : Qrob_P0115600.2 Q. robur
Protein Identifier  ? Qrob_P0115600.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=3) K12450 - UDP-glucose 4,6-dehydratase [EC:4.2.1.76] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 685  
Kegg Orthology  K12450
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0050662 coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
GO:0008460 dTDP-glucose 4,6-dehydratase activity Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O.
GO:0009225 nucleotide-sugar metabolic process The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa002547mg 6 684 + 679 Gaps:23 99.39 660 84.91 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320150 6 684 + 679 Gaps:23 99.39 660 84.91 0.0 probable rhamnose biosynthetic enzyme 1
blastp_kegg lcl|vvi:100253745 1 684 + 684 Gaps:27 100.00 657 86.00 0.0 probable rhamnose biosynthetic enzyme 1-like
blastp_kegg lcl|pop:POPTR_0006s28750g 1 684 + 684 Gaps:24 100.00 660 84.09 0.0 hypothetical protein
blastp_kegg lcl|fve:101311653 1 684 + 684 Gaps:24 100.00 660 85.00 0.0 probable rhamnose biosynthetic enzyme 1-like
blastp_kegg lcl|pxb:103957533 6 683 + 678 Gaps:23 99.24 660 85.34 0.0 probable rhamnose biosynthetic enzyme 1
blastp_kegg lcl|pxb:103953593 6 683 + 678 Gaps:23 99.24 660 85.34 0.0 probable rhamnose biosynthetic enzyme 1
blastp_kegg lcl|mdm:103456084 6 684 + 679 Gaps:23 99.39 660 84.76 0.0 probable rhamnose biosynthetic enzyme 1
blastp_kegg lcl|csv:101214230 1 684 + 684 Gaps:30 100.00 668 83.68 0.0 probable rhamnose biosynthetic enzyme 1-like
blastp_kegg lcl|cmo:103488221 9 684 + 676 Gaps:30 98.95 667 84.39 0.0 probable rhamnose biosynthetic enzyme 2
blastp_pdb 4egb_H 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_G 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_F 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_E 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_D 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_C 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_B 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 4egb_A 13 331 + 319 Gaps:5 91.33 346 43.04 3e-81 mol:protein length:346 dTDP-glucose 4 6-dehydratase
blastp_pdb 2hun_B 14 342 + 329 Gaps:9 97.02 336 41.41 9e-77 mol:protein length:336 336aa long hypothetical dTDP-glucose 4 6-dehy
blastp_pdb 2hun_A 14 342 + 329 Gaps:9 97.02 336 41.41 9e-77 mol:protein length:336 336aa long hypothetical dTDP-glucose 4 6-dehy
blastp_uniprot_sprot sp|Q9SYM5|RHM1_ARATH 8 684 + 677 Gaps:36 99.70 669 77.81 0.0 Probable rhamnose biosynthetic enzyme 1 OS Arabidopsis thaliana GN RHM1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LH76|RHM3_ARATH 8 684 + 677 Gaps:31 99.70 664 77.95 0.0 Probable rhamnose biosynthetic enzyme 3 OS Arabidopsis thaliana GN RHM3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LPG6|RHM2_ARATH 8 684 + 677 Gaps:32 99.40 667 77.38 0.0 Probable rhamnose biosynthetic enzyme 2 OS Arabidopsis thaliana GN RHM2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8VDR7|TGDS_MOUSE 2 342 + 341 Gaps:13 95.77 355 50.00 1e-104 dTDP-D-glucose 4 6-dehydratase OS Mus musculus GN Tgds PE 2 SV 2
blastp_uniprot_sprot sp|A6QLW2|TGDS_BOVIN 5 342 + 338 Gaps:12 95.21 355 49.11 2e-104 dTDP-D-glucose 4 6-dehydratase OS Bos taurus GN TGDS PE 2 SV 1
blastp_uniprot_sprot sp|O95455|TGDS_HUMAN 7 342 + 336 Gaps:11 96.29 350 48.66 5e-104 dTDP-D-glucose 4 6-dehydratase OS Homo sapiens GN TGDS PE 2 SV 1
blastp_uniprot_sprot sp|Q54WS6|TGDS_DICDI 14 331 + 318 Gaps:42 82.49 434 48.32 7e-101 dTDP-D-glucose 4 6-dehydratase OS Dictyostelium discoideum GN tgds PE 3 SV 1
blastp_uniprot_sprot sp|Q5UR12|TGDS_MIMIV 12 327 + 316 Gaps:6 96.59 323 49.04 1e-92 Putative dTDP-D-glucose 4 6-dehydratase OS Acanthamoeba polyphaga mimivirus GN MIMI_R141 PE 3 SV 1
blastp_uniprot_sprot sp|P37777|RMLB_SHIFL 14 339 + 326 Gaps:23 96.12 361 40.06 3e-73 dTDP-glucose 4 6-dehydratase OS Shigella flexneri GN rfbB PE 3 SV 2
blastp_uniprot_sprot sp|P27830|RMLB2_ECOLI 12 334 + 323 Gaps:21 95.77 355 40.59 3e-72 dTDP-glucose 4 6-dehydratase 2 OS Escherichia coli (strain K12) GN rffG PE 1 SV 3

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 9 337 329 SSF51735 none none none
PANTHER 10 343 334 PTHR10366 none none none
Gene3D 197 332 136 G3DSA:3.90.25.10 none none none
SUPERFAMILY 376 663 288 SSF51735 none none none
PANTHER 10 343 334 PTHR10366:SF41 "KEGG:00521+4.2.1.46","KEGG:00523+4.2.1.46","MetaCyc:PWY-3221","MetaCyc:PWY-6808","MetaCyc:PWY-6942","MetaCyc:PWY-6953","MetaCyc:PWY-6973","MetaCyc:PWY-6974","MetaCyc:PWY-6976","MetaCyc:PWY-7104","MetaCyc:PWY-7301","MetaCyc:PWY-7312","MetaCyc:PWY-7315","MetaCyc:PWY-7316","MetaCyc:PWY-7318","MetaCyc:PWY-7413","MetaCyc:PWY-7414","MetaCyc:PWY-7440";signature_desc=DTDP-GLUCOSE 4,6-DEHYDRATASE none IPR005888
Gene3D 375 627 253 G3DSA:3.40.50.720 none none IPR016040
Gene3D 9 196 188 G3DSA:3.40.50.720 none none IPR016040
Pfam 14 256 243 PF01370 none NAD dependent epimerase/dehydratase family IPR001509
Pfam 378 512 135 PF04321 none RmlD substrate binding domain IPR029903

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2

0 Targeting