Protein : Qrob_P0112820.2 Q. robur
Protein Identifier  ? Qrob_P0112820.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=9) PTHR11206:SF102 - MATE EFFLUX FAMILY PROTEIN (PTHR11206:SF102) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 428  
Kegg Orthology  K03327
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0006855 drug transmembrane transport The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
GO:0015238 drug transmembrane transporter activity Enables the directed movement of a drug from one side of a membrane to the other. A drug is any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
GO:0015297 antiporter activity Enables the active transport of a solute across a membrane by a mechanism whereby two or more species are transported in opposite directions in a tightly coupled process not directly linked to a form of energy other than chemiosmotic energy. The reaction is: solute A(out) + solute B(in) = solute A(in) + solute B(out).
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.

29 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_025766 1 420 + 420 Gaps:61 86.93 551 63.05 0.0 Multidrug resistance pump putative
blastp_kegg lcl|rcu:RCOM_0845400 2 426 + 425 Gaps:56 98.36 487 62.84 0.0 multidrug resistance pump putative
blastp_kegg lcl|cit:102631271 1 420 + 420 Gaps:55 99.37 478 63.37 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|cic:CICLE_v10031420mg 1 420 + 420 Gaps:49 99.36 472 63.54 0.0 hypothetical protein
blastp_kegg lcl|cit:102613160 1 420 + 420 Gaps:56 99.37 479 62.39 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|rcu:RCOM_0845390 2 419 + 418 Gaps:56 97.93 484 61.39 0.0 multidrug resistance pump putative
blastp_kegg lcl|tcc:TCM_025764 1 420 + 420 Gaps:55 97.94 485 58.95 0.0 Multidrug resistance pump putative
blastp_kegg lcl|vvi:100251800 1 420 + 420 Gaps:55 97.94 485 58.53 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|vvi:100265386 1 424 + 424 Gaps:56 98.56 485 57.53 0.0 protein TRANSPARENT TESTA 12-like
blastp_kegg lcl|rcu:RCOM_0845270 1 426 + 426 Gaps:56 98.56 487 55.83 0.0 multidrug resistance pump putative
blastp_pdb 3mku_B 14 389 + 376 Gaps:84 95.65 460 21.82 5e-12 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mku_A 14 389 + 376 Gaps:84 95.65 460 21.82 5e-12 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_B 14 389 + 376 Gaps:84 95.65 460 21.82 5e-12 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_pdb 3mkt_A 14 389 + 376 Gaps:84 95.65 460 21.82 5e-12 mol:protein length:460 Multi antimicrobial extrusion protein (Na(+)/
blastp_uniprot_sprot sp|Q9LYT3|TT12_ARATH 23 410 + 388 Gaps:56 87.57 507 34.91 9e-79 Protein TRANSPARENT TESTA 12 OS Arabidopsis thaliana GN TT12 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GXM8|MATE7_ARATH 19 408 + 390 Gaps:60 93.70 476 30.94 1e-46 MATE efflux family protein 7 OS Arabidopsis thaliana GN DTXL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA3|MATE6_ARATH 1 408 + 408 Gaps:66 98.32 476 29.06 1e-46 MATE efflux family protein 6 OS Arabidopsis thaliana GN DTXL2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9SIA4|MATE5_ARATH 19 408 + 390 Gaps:56 93.70 476 30.27 5e-46 MATE efflux family protein 5 OS Arabidopsis thaliana GN DTXL1 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SIA5|DTX1_ARATH 2 408 + 407 Gaps:61 96.64 476 30.22 1e-45 MATE efflux family protein DTX1 OS Arabidopsis thaliana GN DTX1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SIA1|MATE8_ARATH 2 408 + 407 Gaps:78 98.32 477 30.49 2e-45 MATE efflux family protein 8 OS Arabidopsis thaliana GN DTXL4 PE 3 SV 2
blastp_uniprot_sprot sp|Q8RWF5|MATE9_ARATH 1 408 + 408 Gaps:79 97.52 483 29.51 1e-42 MATE efflux family protein 9 OS Arabidopsis thaliana GN DTXL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH2|ALF5_ARATH 2 399 + 398 Gaps:61 94.97 477 28.04 6e-40 MATE efflux family protein ALF5 OS Arabidopsis thaliana GN ALF5 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LUH3|LAL5_ARATH 2 399 + 398 Gaps:63 97.01 469 26.37 4e-37 MATE efflux family protein LAL5 OS Arabidopsis thaliana GN LAL5 PE 2 SV 1
blastp_uniprot_sprot sp|Q5RFD2|S47A1_PONAB 23 426 + 404 Gaps:67 80.88 570 27.55 2e-32 Multidrug and toxin extrusion protein 1 OS Pongo abelii GN SLC47A1 PE 2 SV 1
rpsblast_cdd gnl|CDD|162043 33 325 + 293 Gaps:57 100.00 342 25.73 1e-33 TIGR00797 matE putative efflux protein MATE family. The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus a putative ethionine resistance protein of Saccharomyces cerevisiae and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
rpsblast_cdd gnl|CDD|30880 9 397 + 389 Gaps:62 97.80 455 18.88 3e-29 COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms].
rpsblast_cdd gnl|CDD|179333 18 380 + 363 Gaps:82 92.76 456 25.06 2e-19 PRK01766 PRK01766 multidrug efflux protein Reviewed.
rpsblast_cdd gnl|CDD|190033 33 361 + 329 Gaps:14 100.00 161 40.99 6e-18 pfam01554 MatE MatE. The MatE domain.
rpsblast_kog gnl|CDD|36561 8 410 + 403 Gaps:56 96.62 473 31.73 5e-80 KOG1347 KOG1347 KOG1347 Uncharacterized membrane protein predicted efflux pump [General function prediction only].

25 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 308 312 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 175 194 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 372 393 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 164 174 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 313 335 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 142 163 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 9 418 410 PTHR11206 none none none
Phobius 342 366 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 64 88 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 200 225 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 89 108 20 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 9 418 410 PTHR11206:SF102 none none none
Phobius 131 141 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 27 52 26 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 336 341 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 53 63 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 109 130 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 226 285 60 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 286 307 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 195 199 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 33 193 161 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Pfam 255 360 106 PF01554 "Reactome:REACT_15518","Reactome:REACT_20633" MatE IPR002528
Phobius 1 26 26 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 394 427 34 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 367 371 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

8 Localization

Analysis Start End Length
TMHMM 313 335 22
TMHMM 342 364 22
TMHMM 276 298 22
TMHMM 145 163 18
TMHMM 374 393 19
TMHMM 108 130 22
TMHMM 176 195 19
TMHMM 205 227 22

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2002_QTL17_peak_Bud_burst_A4 Qrob_Chr12 12 s_1CTJ3J_556 s_1CTJ3J_556 0 0 25 lod 2,9 6
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting