Protein : Qrob_P0103160.2 Q. robur
Protein Identifier  ? Qrob_P0103160.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11777:SF9 - ALANINE--TRNA LIGASE, CYTOPLASMIC (PTHR11777:SF9) Code Enzyme  EC:6.1.1.7
Gene Prediction Quality  validated Protein length 

Sequence

Length: 334  
Kegg Orthology  K01872
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO:0004813 alanine-tRNA ligase activity Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).
GO:0006419 alanyl-tRNA aminoacylation The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO:0016876 ligase activity, forming aminoacyl-tRNA and related compounds Catalysis of the joining of an amino acid and a nucleic acid (usually tRNA) or poly(ribitol phosphate), with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate. The reaction forms an aminoacyl-tRNA or a related compound.
GO:0043039 tRNA aminoacylation The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0005s09710g 5 333 + 329 Gaps:4 36.71 967 80.85 1e-146 POPTRDRAFT_558710 alanyl-tRNA synthetase family protein
blastp_kegg lcl|brp:103849540 5 332 + 328 Gaps:66 57.60 684 59.90 3e-145 alanine--tRNA ligase-like
blastp_kegg lcl|pper:PRUPE_ppa000923mg 5 333 + 329 Gaps:6 36.98 960 80.28 1e-144 hypothetical protein
blastp_kegg lcl|vvi:100249161 5 333 + 329 none 33.53 1002 83.63 1e-143 alanyl-tRNA synthetase-like
blastp_kegg lcl|pmum:103321062 5 333 + 329 Gaps:6 34.83 1025 79.55 7e-143 alanine--tRNA ligase
blastp_kegg lcl|rcu:RCOM_0036070 5 333 + 329 Gaps:4 38.15 1025 72.89 1e-142 alanyl-tRNA synthetase putative (EC:6.1.1.7)
blastp_kegg lcl|cic:CICLE_v10030624mg 5 333 + 329 none 34.27 1001 81.34 2e-141 hypothetical protein
blastp_kegg lcl|cit:102622589 5 310 + 306 Gaps:4 32.90 1009 79.82 2e-139 alanine--tRNA ligase-like
blastp_kegg lcl|mdm:103403408 5 333 + 329 Gaps:9 39.70 1015 70.97 1e-137 alanine--tRNA ligase
blastp_kegg lcl|tcc:TCM_007751 5 333 + 329 Gaps:4 34.29 1015 79.02 1e-137 Alanyl-tRNA synthetase putative
blastp_pdb 2zzg_B 5 215 + 211 Gaps:20 25.66 752 36.79 5e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zzg_A 5 215 + 211 Gaps:20 25.66 752 36.79 5e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zzf_A 5 215 + 211 Gaps:20 25.66 752 36.79 5e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zze_B 5 215 + 211 Gaps:20 25.66 752 36.79 5e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2zze_A 5 215 + 211 Gaps:20 25.66 752 36.79 5e-17 mol:protein length:752 Alanyl-tRNA synthetase
blastp_pdb 2ztg_A 9 215 + 207 Gaps:22 25.30 739 34.76 4e-16 mol:protein length:739 Alanyl-tRNA synthetase
blastp_uniprot_sprot sp|P36428|SYA_ARATH 5 332 + 328 none 33.40 1003 77.31 2e-133 Alanine--tRNA ligase OS Arabidopsis thaliana GN ALATS PE 1 SV 3
blastp_uniprot_sprot sp|P40825|SYA_YEAST 5 246 + 242 Gaps:3 24.52 983 55.60 2e-76 Alanine--tRNA ligase mitochondrial OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN ALA1 PE 1 SV 3
blastp_uniprot_sprot sp|Q5A8K2|SYA_CANAL 5 243 + 239 Gaps:5 24.56 969 54.20 2e-73 Alanine--tRNA ligase OS Candida albicans (strain SC5314 / ATCC MYA-2876) GN ALA1 PE 1 SV 1
blastp_uniprot_sprot sp|Q54Y20|SYAC_DICDI 5 256 + 252 Gaps:3 26.96 946 49.80 5e-70 Alanine--tRNA ligase cytoplasmic OS Dictyostelium discoideum GN alaS PE 2 SV 1
blastp_uniprot_sprot sp|O13914|SYA_SCHPO 5 230 + 226 Gaps:5 23.46 959 49.78 1e-62 Alanine--tRNA ligase OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN ala1 PE 1 SV 1
blastp_uniprot_sprot sp|Q5RC02|SYAC_PONAB 5 238 + 234 Gaps:10 24.38 968 48.73 4e-58 Alanine--tRNA ligase cytoplasmic OS Pongo abelii GN AARS PE 2 SV 1
blastp_uniprot_sprot sp|Q5AQL1|SYA_EMENI 20 238 + 219 Gaps:2 22.58 961 48.85 5e-58 Alanine--tRNA ligase OS Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN ala1 PE 3 SV 2
blastp_uniprot_sprot sp|P49588|SYAC_HUMAN 5 235 + 231 Gaps:10 24.07 968 49.36 8e-58 Alanine--tRNA ligase cytoplasmic OS Homo sapiens GN AARS PE 1 SV 2
blastp_uniprot_sprot sp|P50475|SYAC_RAT 5 238 + 234 Gaps:10 24.38 968 48.31 4e-57 Alanine--tRNA ligase cytoplasmic OS Rattus norvegicus GN Aars PE 1 SV 3
blastp_uniprot_sprot sp|Q8CFX8|SYAC_MESAU 5 238 + 234 Gaps:10 24.38 968 47.88 1e-56 Alanine--tRNA ligase cytoplasmic OS Mesocricetus auratus GN Aars PE 2 SV 1
rpsblast_cdd gnl|CDD|178488 5 330 + 326 Gaps:20 35.68 936 55.09 1e-111 PLN02900 PLN02900 alanyl-tRNA synthetase.
rpsblast_cdd gnl|CDD|178947 5 332 + 328 Gaps:87 43.12 865 35.39 1e-62 PRK00252 alaS alanyl-tRNA synthetase Reviewed.
rpsblast_cdd gnl|CDD|30363 5 250 + 246 Gaps:21 26.05 879 48.91 7e-60 COG0013 AlaS Alanyl-tRNA synthetase [Translation ribosomal structure and biogenesis].
rpsblast_cdd gnl|CDD|161830 5 244 + 240 Gaps:28 27.03 851 45.65 1e-56 TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP L-alanyl-tRNAala + pyrophosphate + AMP).

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 157 216 60 SM00863 none Threonyl and Alanyl tRNA synthetase second additional domain IPR012947
PANTHER 5 333 329 PTHR11777:SF9 none none none
Gene3D 66 124 59 G3DSA:3.30.980.10 none none none
Gene3D 192 205 14 G3DSA:3.30.980.10 none none none
Pfam 5 59 55 PF01411 "KEGG:00970+6.1.1.7" tRNA synthetases class II (A) IPR018164
ProSiteProfiles 5 229 225 PS50860 "KEGG:00970+6.1.1.7" Alanyl-transfer RNA synthetases family profile. IPR018165
Pfam 157 215 59 PF07973 none Threonyl and Alanyl tRNA synthetase second additional domain IPR012947
Pfam 254 325 72 PF02272 "KEGG:00970+6.1.1.7" DHHA1 domain IPR003156
PANTHER 5 333 329 PTHR11777 none none none
SUPERFAMILY 55 232 178 SSF55186 none none IPR018163

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

0 Targeting