Protein : Qrob_P0102830.2 Q. robur
Protein Identifier  ? Qrob_P0102830.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K03648 - uracil-DNA glycosylase [EC:3.2.2.-] Code Enzyme  EC:3.2.2.27
Gene Prediction Quality  validated Protein length 

Sequence

Length: 319  
Kegg Orthology  K03648
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006281 DNA repair The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO:0006284 base-excision repair In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase.
GO:0004844 uracil DNA N-glycosylase activity Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine.
GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds Catalysis of the hydrolysis of any N-glycosyl bond.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_011079 3 318 + 316 Gaps:19 94.65 318 75.42 8e-154 Uracil dna glycosylase isoform 1
blastp_kegg lcl|mdm:103403419 2 318 + 317 Gaps:9 85.33 368 70.38 1e-152 uracil-DNA glycosylase
blastp_kegg lcl|gmx:100818241 1 318 + 318 Gaps:15 100.00 303 72.94 2e-152 uracil-DNA glycosylase-like
blastp_kegg lcl|pxb:103943185 2 318 + 317 Gaps:11 85.33 368 70.70 2e-152 uracil-DNA glycosylase
blastp_kegg lcl|pmum:103321046 6 318 + 313 Gaps:8 83.60 372 69.77 5e-152 uracil-DNA glycosylase
blastp_kegg lcl|pper:PRUPE_ppa022483mg 6 318 + 313 Gaps:8 98.11 317 69.45 6e-152 hypothetical protein
blastp_kegg lcl|csv:101207581 6 318 + 313 Gaps:26 96.54 318 71.01 8e-150 uracil-DNA glycosylase-like
blastp_kegg lcl|sot:102588365 1 318 + 318 Gaps:16 100.00 320 68.44 8e-149 uracil-DNA glycosylase-like
blastp_kegg lcl|cit:102619856 4 318 + 315 Gaps:29 99.69 327 67.79 7e-148 uracil-DNA glycosylase-like
blastp_kegg lcl|pvu:PHAVU_011G031800g 5 318 + 314 Gaps:17 99.66 298 71.38 1e-147 hypothetical protein
blastp_pdb 2jhq_A 100 317 + 218 Gaps:4 95.58 226 56.02 7e-81 mol:protein length:226 URACIL DNA-GLYCOSYLASE
blastp_pdb 3tr7_A 92 318 + 227 Gaps:3 96.55 232 57.14 1e-80 mol:protein length:232 Uracil-DNA glycosylase
blastp_pdb 1eui_B 98 316 + 219 Gaps:4 95.18 228 58.53 2e-80 mol:protein length:228 URACIL-DNA GLYCOSYLASE
blastp_pdb 1eui_A 98 316 + 219 Gaps:4 95.18 228 58.53 2e-80 mol:protein length:228 URACIL-DNA GLYCOSYLASE
blastp_pdb 1uug_C 98 316 + 219 Gaps:4 94.76 229 58.53 2e-80 mol:protein length:229 URACIL-DNA GLYCOSYLASE
blastp_pdb 1uug_A 98 316 + 219 Gaps:4 94.76 229 58.53 2e-80 mol:protein length:229 URACIL-DNA GLYCOSYLASE
blastp_pdb 1lqm_G 98 316 + 219 Gaps:4 94.76 229 58.53 2e-80 mol:protein length:229 URACIL-DNA GLYCOSYLASE
blastp_pdb 1lqm_E 98 316 + 219 Gaps:4 94.76 229 58.53 2e-80 mol:protein length:229 URACIL-DNA GLYCOSYLASE
blastp_pdb 1lqm_C 98 316 + 219 Gaps:4 94.76 229 58.53 2e-80 mol:protein length:229 URACIL-DNA GLYCOSYLASE
blastp_pdb 1lqm_A 98 316 + 219 Gaps:4 94.76 229 58.53 2e-80 mol:protein length:229 URACIL-DNA GLYCOSYLASE
blastp_uniprot_sprot sp|Q88N05|UNG_PSEPK 85 318 + 234 Gaps:8 98.26 230 61.50 3e-88 Uracil-DNA glycosylase OS Pseudomonas putida (strain KT2440) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|A5W8H2|UNG_PSEP1 85 318 + 234 Gaps:8 98.26 230 61.50 6e-88 Uracil-DNA glycosylase OS Pseudomonas putida (strain F1 / ATCC 700007) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|B0KV50|UNG_PSEPG 85 318 + 234 Gaps:8 98.26 230 61.95 9e-88 Uracil-DNA glycosylase OS Pseudomonas putida (strain GB-1) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|C1DQR0|UNG_AZOVD 97 318 + 222 Gaps:3 94.40 232 61.19 2e-87 Uracil-DNA glycosylase OS Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|Q1I5T6|UNG_PSEE4 85 318 + 234 Gaps:8 98.26 230 59.73 1e-85 Uracil-DNA glycosylase OS Pseudomonas entomophila (strain L48) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|B1J4J3|UNG_PSEPW 85 318 + 234 Gaps:8 98.26 230 59.73 3e-84 Uracil-DNA glycosylase OS Pseudomonas putida (strain W619) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|Q3KGL4|UNG_PSEPF 97 318 + 222 Gaps:3 94.81 231 57.99 5e-84 Uracil-DNA glycosylase OS Pseudomonas fluorescens (strain Pf0-1) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|B7GMM1|UNG_ANOFW 107 318 + 212 Gaps:2 93.33 225 62.38 7e-84 Uracil-DNA glycosylase OS Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|A7I0A8|UNG_CAMHC 90 318 + 229 Gaps:4 95.74 235 58.22 7e-83 Uracil-DNA glycosylase OS Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN ung PE 3 SV 1
blastp_uniprot_sprot sp|A6L7T5|UNG_BACV8 97 316 + 220 Gaps:4 98.18 220 56.02 1e-82 Uracil-DNA glycosylase OS Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN ung PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SMART 146 306 161 SM00986 none Uracil DNA glycosylase superfamily IPR005122
Gene3D 85 318 234 G3DSA:3.40.470.10 none none IPR005122
SUPERFAMILY 105 317 213 SSF52141 none none IPR005122
PANTHER 53 318 266 PTHR11264 none none IPR002043
Pfam 149 306 158 PF03167 none Uracil DNA glycosylase superfamily IPR005122
SMART 146 306 161 SM00987 none UreE urease accessory protein, C-terminal domain none
ProSitePatterns 154 163 10 PS00130 none Uracil-DNA glycosylase signature. IPR018085
TIGRFAM 105 309 205 TIGR00628 none ung: uracil-DNA glycosylase IPR002043

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran_2000_2002_QTL6_Delta.F Qrob_Chr03 3 s_2HYXJ2_207 s_1AUAXK_317 29.12 6,3 45,37 lod 3.1666 0.026
Bourran2_2014_nLBD_3P Qrob_Chr03 3 s_1ET7H8_604 s_1BYNB5_834 23,73 0 46,72 lod 1,7573 3,8
PM_1999_QTL14_peak_Bud_burst_3P Qrob_Chr03 3 s_2F0SI1_756 v_6056_735 11,78 3,78 50,78 lod 2,5 4,5
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran2_2014_rEpiBC*_3P Qrob_Chr03 3 s_1A3B3X_1163 s_1DKGMO_450 23,04 4,92 41,12 lod 2,5668 7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 46   Mitochondrion 5 0.063 0.467 NON-PLANT 46