Protein : Qrob_P0101950.2 Q. robur
Protein Identifier  ? Qrob_P0101950.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10775 - phenylalanine ammonia-lyase [EC:4.3.1.24] Code Enzyme  EC:4.3.1.24
Gene Prediction Quality  validated Protein length 

Sequence

Length: 710  
Kegg Orthology  K10775
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0 Synonyms

5 GO Terms

Identifier Name Description
GO:0005737 cytoplasm All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0009058 biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
GO:0016841 ammonia-lyase activity Catalysis of the release of ammonia by the cleavage of a carbon-nitrogen bond or the reverse reaction with ammonia as a substrate.
GO:0006559 L-phenylalanine catabolic process The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid.

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|rcu:RCOM_0262230 5 708 + 704 Gaps:5 98.61 719 88.29 0.0 Phenylalanine ammonia-lyase putative (EC:4.3.1.24)
blastp_kegg lcl|cic:CICLE_v10030821mg 5 708 + 704 none 97.51 722 87.36 0.0 hypothetical protein
blastp_kegg lcl|cit:102607860 5 708 + 704 none 97.51 722 87.36 0.0 phenylalanine ammonia-lyase-like
blastp_kegg lcl|tcc:TCM_043179 4 708 + 705 Gaps:2 98.60 713 88.05 0.0 Phenylalanine ammonia-lyase 2
blastp_kegg lcl|pop:POPTR_0010s23100g 1 708 + 708 Gaps:6 99.86 711 87.18 0.0 POPTRDRAFT_822571 phenylalanine ammonia-lyase family protein
blastp_kegg lcl|gmx:100818777 1 708 + 708 Gaps:8 99.86 717 86.03 0.0 phenylalanine ammonia-lyase 2-like
blastp_kegg lcl|pop:POPTR_0008s03810g 4 708 + 705 Gaps:2 98.87 711 87.62 0.0 POPTRDRAFT_820249 phenylalanine ammonia-lyase family protein
blastp_kegg lcl|mdm:103430265 16 709 + 694 Gaps:1 96.25 720 88.60 0.0 phenylalanine ammonia-lyase 1
blastp_kegg lcl|pmum:103332355 16 709 + 694 none 96.52 719 87.75 0.0 phenylalanine ammonia-lyase 1
blastp_kegg lcl|gmx:100801470 1 708 + 708 Gaps:8 99.86 717 85.75 0.0 phenylalanine ammonia-lyase 2-like
blastp_pdb 1w27_B 3 708 + 706 Gaps:6 98.32 716 84.38 0.0 mol:protein length:716 PHENYLALANINE AMMONIA-LYASE 1
blastp_pdb 1w27_A 3 708 + 706 Gaps:6 98.32 716 84.38 0.0 mol:protein length:716 PHENYLALANINE AMMONIA-LYASE 1
blastp_pdb 3nz4_B 23 705 + 683 Gaps:24 97.28 698 46.98 0.0 mol:protein length:698 Phenylalanine ammonia-lyase
blastp_pdb 3nz4_A 23 705 + 683 Gaps:24 97.28 698 46.98 0.0 mol:protein length:698 Phenylalanine ammonia-lyase
blastp_pdb 2yii_D 21 705 + 685 Gaps:24 96.32 707 46.70 0.0 mol:protein length:707 PHENYLALANINE AMMONIA-LYASE
blastp_pdb 2yii_C 21 705 + 685 Gaps:24 96.32 707 46.70 0.0 mol:protein length:707 PHENYLALANINE AMMONIA-LYASE
blastp_pdb 2yii_B 21 705 + 685 Gaps:24 96.32 707 46.70 0.0 mol:protein length:707 PHENYLALANINE AMMONIA-LYASE
blastp_pdb 2yii_A 21 705 + 685 Gaps:24 96.32 707 46.70 0.0 mol:protein length:707 PHENYLALANINE AMMONIA-LYASE
blastp_pdb 1y2m_D 28 698 + 671 Gaps:56 95.67 716 36.79 3e-111 mol:protein length:716 Phenylalanine ammonia-lyase
blastp_pdb 1y2m_C 28 698 + 671 Gaps:56 95.67 716 36.79 3e-111 mol:protein length:716 Phenylalanine ammonia-lyase
blastp_uniprot_sprot sp|Q42667|PALY_CITLI 5 708 + 704 none 97.51 722 86.93 0.0 Phenylalanine ammonia-lyase OS Citrus limon GN PAL6 PE 2 SV 1
blastp_uniprot_sprot sp|P45726|PALY_CAMSI 6 708 + 703 Gaps:1 98.32 714 85.90 0.0 Phenylalanine ammonia-lyase OS Camellia sinensis GN PAL PE 2 SV 1
blastp_uniprot_sprot sp|Q9SMK9|PAL2_CICAR 1 708 + 708 Gaps:8 99.72 718 84.08 0.0 Phenylalanine ammonia-lyase 2 OS Cicer arietinum GN PAL2 PE 2 SV 1
blastp_uniprot_sprot sp|P45729|PAL3_PETCR 1 708 + 708 Gaps:9 99.86 718 84.38 0.0 Phenylalanine ammonia-lyase 3 OS Petroselinum crispum GN PAL3 PE 2 SV 1
blastp_uniprot_sprot sp|P25872|PAL1_TOBAC 3 708 + 706 Gaps:5 99.16 715 83.64 0.0 Phenylalanine ammonia-lyase OS Nicotiana tabacum GN TPA1 PE 2 SV 1
blastp_uniprot_sprot sp|Q43052|PAL2_POPKI 1 708 + 708 Gaps:7 99.86 710 85.19 0.0 Phenylalanine ammonia-lyase G2B OS Populus kitakamiensis GN PALG2B PE 3 SV 1
blastp_uniprot_sprot sp|P45730|PALY_POPTR 7 708 + 702 Gaps:2 98.46 715 84.52 0.0 Phenylalanine ammonia-lyase OS Populus trichocarpa GN PAL PE 2 SV 1
blastp_uniprot_sprot sp|O23865|PAL1_DAUCA 14 708 + 695 Gaps:2 97.88 708 85.57 0.0 Phenylalanine ammonia-lyase 1 OS Daucus carota GN PAL1 PE 3 SV 1
blastp_uniprot_sprot sp|P45733|PAL3_TOBAC 14 708 + 695 Gaps:2 97.89 712 84.79 0.0 Phenylalanine ammonia-lyase OS Nicotiana tabacum PE 2 SV 1
blastp_uniprot_sprot sp|P27991|PAL1_SOYBN 1 709 + 709 Gaps:4 100.00 713 83.73 0.0 Phenylalanine ammonia-lyase 1 OS Glycine max GN PAL1 PE 3 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 15 663 649 PTHR10362 none none none
SUPERFAMILY 18 708 691 SSF48557 none none IPR008948
Gene3D 528 643 116 G3DSA:1.10.274.20 "KEGG:00360+4.3.1.24","KEGG:00940+4.3.1.24","MetaCyc:PWY-1121","MetaCyc:PWY-5883","MetaCyc:PWY-6444","MetaCyc:PWY-6457","UniPathway:UPA00713" none IPR023144
PANTHER 15 663 649 PTHR10362:SF7 none none none
Gene3D 17 254 238 G3DSA:1.10.275.10 none none IPR024083
ProSitePatterns 191 207 17 PS00488 none Phenylalanine and histidine ammonia-lyases signature. IPR022313
Pfam 49 541 493 PF00221 none Aromatic amino acid lyase IPR001106
Gene3D 644 698 55 G3DSA:1.20.200.10 none none none
Gene3D 255 527 273 G3DSA:1.20.200.10 none none none
TIGRFAM 18 699 682 TIGR01226 "KEGG:00360+4.3.1.24","KEGG:00940+4.3.1.24","MetaCyc:PWY-1121","MetaCyc:PWY-5883","MetaCyc:PWY-6444","MetaCyc:PWY-6457","UniPathway:UPA00713" phe_am_lyase: phenylalanine ammonia-lyase IPR005922

0 Localization

8 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04

0 Targeting