Protein : Qrob_P0096050.2 Q. robur
Protein Identifier  ? Qrob_P0096050.2 Organism . Name  Quercus robur
Score  98.0 Score Type  egn
Protein Description  (M=17) K05658 - ATP-binding cassette, subfamily B (MDR/TAP), member 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1326  
Kegg Orthology  K05658
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004938 1 1324 + 1324 Gaps:39 99.92 1292 80.71 0.0 ATP binding cassette subfamily B4 isoform 1
blastp_kegg lcl|pop:POPTR_0014s10880g 1 1324 + 1324 Gaps:35 99.92 1294 80.36 0.0 POPTRDRAFT_834831 hypothetical protein
blastp_kegg lcl|vvi:100267452 1 1324 + 1324 Gaps:37 100.00 1297 79.49 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|pmum:103327260 1 1324 + 1324 Gaps:38 99.92 1297 79.71 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|gmx:100777909 1 1325 + 1325 Gaps:49 100.00 1282 80.03 0.0 ABC transporter B family member 21-like
blastp_kegg lcl|gmx:100800034 1 1325 + 1325 Gaps:45 100.00 1282 80.42 0.0 ABC transporter B family member 4-like
blastp_kegg lcl|pper:PRUPE_ppa000313mg 1 1324 + 1324 Gaps:42 99.77 1295 79.49 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_1g086080 1 1325 + 1325 Gaps:48 100.00 1289 79.60 0.0 ABC transporter B family member
blastp_kegg lcl|cam:101489402 1 1325 + 1325 Gaps:50 100.00 1283 79.35 0.0 ABC transporter B family member 21-like
blastp_kegg lcl|pxb:103953074 1 1324 + 1324 Gaps:35 99.92 1296 78.30 0.0 ABC transporter B family member 11
blastp_pdb 3g5u_B 34 1325 + 1292 Gaps:115 96.50 1284 50.52 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 34 1325 + 1292 Gaps:115 96.50 1284 50.52 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_B 34 1325 + 1292 Gaps:115 96.50 1284 50.28 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 34 1325 + 1292 Gaps:115 96.50 1284 50.28 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 34 1325 + 1292 Gaps:115 96.50 1284 50.28 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 34 1325 + 1292 Gaps:115 96.50 1284 50.28 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 2yl4_A 106 1316 + 1211 Gaps:54 89.58 595 50.84 6e-108 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 106 1316 + 1211 Gaps:54 84.81 619 51.05 5e-106 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3b60_D 71 1315 + 1245 Gaps:61 96.39 582 44.74 9e-88 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_pdb 3b60_C 71 1315 + 1245 Gaps:61 96.39 582 44.74 9e-88 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_uniprot_sprot sp|Q9FWX7|AB11B_ARATH 48 1323 + 1276 Gaps:49 96.95 1278 74.98 0.0 ABC transporter B family member 11 OS Arabidopsis thaliana GN ABCB11 PE 2 SV 1
blastp_uniprot_sprot sp|O80725|AB4B_ARATH 49 1324 + 1276 Gaps:38 96.58 1286 74.07 0.0 ABC transporter B family member 4 OS Arabidopsis thaliana GN ABCB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1Q9|AB21B_ARATH 4 1324 + 1321 Gaps:52 99.46 1296 73.16 0.0 ABC transporter B family member 21 OS Arabidopsis thaliana GN ABCB21 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FWX8|AB12B_ARATH 36 1324 + 1289 Gaps:41 98.98 1273 72.22 0.0 ABC transporter B family member 12 OS Arabidopsis thaliana GN ABCB12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SYI3|AB5B_ARATH 35 1323 + 1289 Gaps:102 99.84 1230 73.53 0.0 ABC transporter B family member 5 OS Arabidopsis thaliana GN ABCB5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SYI2|AB3B_ARATH 44 1324 + 1281 Gaps:63 99.92 1229 71.25 0.0 ABC transporter B family member 3 OS Arabidopsis thaliana GN ABCB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M0M2|AB9B_ARATH 34 1323 + 1290 Gaps:107 99.92 1236 69.15 0.0 ABC transporter B family member 9 OS Arabidopsis thaliana GN ABCB9 PE 3 SV 2
blastp_uniprot_sprot sp|Q9FHF1|AB7B_ARATH 50 1323 + 1274 Gaps:51 98.64 1248 61.01 0.0 ABC transporter B family member 7 OS Arabidopsis thaliana GN ABCB7 PE 3 SV 1
blastp_uniprot_sprot sp|Q54BT3|ABCB2_DICDI 18 1317 + 1300 Gaps:164 93.49 1397 50.23 0.0 ABC transporter B family member 2 OS Dictyostelium discoideum GN abcB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LPK2|AB2B_ARATH 18 1323 + 1306 Gaps:129 98.04 1273 55.77 0.0 ABC transporter B family member 2 OS Arabidopsis thaliana GN ABCB2 PE 1 SV 3

45 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 1 63 63 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 216 238 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 421 657 237 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 266 357 92 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 482 1321 840 PTHR24221:SF138 none none none
ProSitePatterns 560 574 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 239 243 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 108 129 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 780 798 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 358 375 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 749 1060 312 SSF90123 none none IPR011527
ProSiteProfiles 760 1045 286 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
SUPERFAMILY 564 572 9 SSF90123 none none IPR011527
SUPERFAMILY 53 384 332 SSF90123 none none IPR011527
Gene3D 421 652 232 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1079 1313 235 G3DSA:3.40.50.300 none none IPR027417
Phobius 64 88 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1019 1040 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 756 779 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 916 979 64 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 412 659 248 SSF52540 none none IPR027417
Phobius 888 915 28 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
SUPERFAMILY 1070 1316 247 SSF52540 none none IPR027417
Phobius 130 215 86 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 89 107 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 376 755 380 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 980 999 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSitePatterns 1220 1234 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 1041 1325 285 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 68 386 319 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527

10 Localization

Analysis Start End Length
TMHMM 758 780 22
TMHMM 322 344 22
TMHMM 800 822 22
TMHMM 115 132 17
TMHMM 243 265 22
TMHMM 982 1004 22
TMHMM 1019 1041 22
TMHMM 893 915 22
TMHMM 64 86 22
TMHMM 216 238 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting