Protein : Qrob_P0096040.2 Q. robur
Protein Identifier  ? Qrob_P0096040.2 Organism . Name  Quercus robur
Score  1.0 Score Type  egn
Protein Description  (M=2) KOG0054//KOG0055//KOG0056//KOG0057//KOG0058//KOG0059//KOG0060//KOG0061//KOG0066//KOG0927 - Multidrug resistance-associated protein/mitoxantrone resistance protein ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Multidrug/pheromone exporter ABC superfamily [Secondary metabolites biosynthesis transport and catabolism]. // Heavy metal exporter HMT1 ABC superfamily [Inorganic ion transport and metabolism]. // Mitochondrial Fe/S cluster exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Peptide exporter ABC superfamily [Intracellular trafficking secretion and vesicular transport]. // Lipid exporter ABCA1 and related proteins ABC superfamily [Lipid transport and metabolism General function prediction only]. // Long-chain acyl-CoA transporter ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism General function prediction only]. // Transporter ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis transport and catabolism]. // eIF2-interacting protein ABC50 (ABC superfamily) [Translation ribosomal structure and biogenesis]. // Predicted transporter (ABC superfamily) [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1326  
Kegg Orthology  K05658
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004938 1 1324 + 1324 Gaps:37 99.92 1292 80.33 0.0 ATP binding cassette subfamily B4 isoform 1
blastp_kegg lcl|pop:POPTR_0014s10880g 1 1324 + 1324 Gaps:35 99.92 1294 80.20 0.0 POPTRDRAFT_834831 hypothetical protein
blastp_kegg lcl|vvi:100267452 1 1324 + 1324 Gaps:37 100.00 1297 79.18 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|pmum:103327260 1 1324 + 1324 Gaps:38 99.92 1297 79.48 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|gmx:100800034 1 1325 + 1325 Gaps:45 100.00 1282 80.42 0.0 ABC transporter B family member 4-like
blastp_kegg lcl|pper:PRUPE_ppa000313mg 1 1324 + 1324 Gaps:42 99.77 1295 79.26 0.0 hypothetical protein
blastp_kegg lcl|mtr:MTR_1g086080 1 1325 + 1325 Gaps:48 100.00 1289 79.52 0.0 ABC transporter B family member
blastp_kegg lcl|gmx:100777909 1 1325 + 1325 Gaps:49 100.00 1282 79.80 0.0 ABC transporter B family member 21-like
blastp_kegg lcl|pxb:103953074 1 1324 + 1324 Gaps:35 99.92 1296 78.22 0.0 ABC transporter B family member 11
blastp_kegg lcl|cam:101489402 1 1325 + 1325 Gaps:50 100.00 1283 79.11 0.0 ABC transporter B family member 21-like
blastp_pdb 3g5u_B 55 1322 + 1268 Gaps:60 96.26 1284 40.61 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 55 1322 + 1268 Gaps:60 96.26 1284 40.61 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_B 55 1322 + 1268 Gaps:60 96.26 1284 40.61 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 55 1322 + 1268 Gaps:60 96.26 1284 40.61 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 55 1322 + 1268 Gaps:60 96.26 1284 40.61 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 55 1322 + 1268 Gaps:60 96.26 1284 40.61 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 2yl4_A 143 1316 + 1174 Gaps:46 88.74 595 50.95 1e-107 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 143 1316 + 1174 Gaps:42 84.01 619 50.96 8e-106 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3b60_D 71 1315 + 1245 Gaps:71 96.39 582 46.88 8e-89 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_pdb 3b60_C 71 1315 + 1245 Gaps:71 96.39 582 46.88 8e-89 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_uniprot_sprot sp|Q9FWX7|AB11B_ARATH 48 1323 + 1276 Gaps:49 96.95 1278 74.90 0.0 ABC transporter B family member 11 OS Arabidopsis thaliana GN ABCB11 PE 2 SV 1
blastp_uniprot_sprot sp|Q9M1Q9|AB21B_ARATH 4 1324 + 1321 Gaps:54 99.46 1296 73.00 0.0 ABC transporter B family member 21 OS Arabidopsis thaliana GN ABCB21 PE 1 SV 2
blastp_uniprot_sprot sp|O80725|AB4B_ARATH 49 1324 + 1276 Gaps:38 96.58 1286 73.59 0.0 ABC transporter B family member 4 OS Arabidopsis thaliana GN ABCB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FWX8|AB12B_ARATH 41 1324 + 1284 Gaps:43 98.59 1273 72.11 0.0 ABC transporter B family member 12 OS Arabidopsis thaliana GN ABCB12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SYI3|AB5B_ARATH 39 1323 + 1285 Gaps:61 99.84 1230 70.52 0.0 ABC transporter B family member 5 OS Arabidopsis thaliana GN ABCB5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SYI2|AB3B_ARATH 44 1324 + 1281 Gaps:61 99.92 1229 71.17 0.0 ABC transporter B family member 3 OS Arabidopsis thaliana GN ABCB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M0M2|AB9B_ARATH 31 1323 + 1293 Gaps:111 99.92 1236 68.99 0.0 ABC transporter B family member 9 OS Arabidopsis thaliana GN ABCB9 PE 3 SV 2
blastp_uniprot_sprot sp|Q9FHF1|AB7B_ARATH 50 1323 + 1274 Gaps:51 98.64 1248 60.60 0.0 ABC transporter B family member 7 OS Arabidopsis thaliana GN ABCB7 PE 3 SV 1
blastp_uniprot_sprot sp|Q54BT3|ABCB2_DICDI 8 1317 + 1310 Gaps:168 94.49 1397 50.38 0.0 ABC transporter B family member 2 OS Dictyostelium discoideum GN abcB2 PE 3 SV 1
blastp_uniprot_sprot sp|Q8LPK2|AB2B_ARATH 18 1323 + 1306 Gaps:141 97.80 1273 57.19 0.0 ABC transporter B family member 2 OS Arabidopsis thaliana GN ABCB2 PE 1 SV 3

45 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 64 88 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 981 999 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 67 202 136 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 759 1029 271 PF00664 none ABC transporter transmembrane region IPR011527
Pfam 219 374 156 PF00664 none ABC transporter transmembrane region IPR011527
Phobius 241 265 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 888 919 32 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 68 386 319 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
PANTHER 482 1321 840 PTHR24221:SF138 none none none
SMART 1107 1300 194 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 448 793 346 SM00382 none ATPases associated with a variety of cellular activities IPR003593
ProSitePatterns 1220 1234 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 1 63 63 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 1019 1040 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 818 887 70 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 1070 1317 248 SSF52540 none none IPR027417
Gene3D 750 1060 311 G3DSA:1.20.1560.10 none none none
Gene3D 52 399 348 G3DSA:1.20.1560.10 none none none
SUPERFAMILY 412 659 248 SSF52540 none none IPR027417
Phobius 799 817 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 920 980 61 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
ProSiteProfiles 421 657 237 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Phobius 780 798 19 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 756 779 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 266 321 56 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 749 1060 312 SSF90123 none none IPR011527
ProSiteProfiles 760 1045 286 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
Phobius 130 240 111 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 89 107 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 108 129 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

10 Localization

Analysis Start End Length
TMHMM 982 1004 22
TMHMM 64 86 22
TMHMM 115 132 17
TMHMM 800 822 22
TMHMM 758 780 22
TMHMM 322 344 22
TMHMM 216 238 22
TMHMM 1019 1041 22
TMHMM 893 915 22
TMHMM 243 265 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting