Protein : Qrob_P0096030.2 Q. robur
Protein Identifier  ? Qrob_P0096030.2 Organism . Name  Quercus robur
Score  97.1 Score Type  egn
Protein Description  (M=17) K05658 - ATP-binding cassette, subfamily B (MDR/TAP), member 1 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 1292  
Kegg Orthology  K05658
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0 Synonyms

6 GO Terms

Identifier Name Description
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0055085 transmembrane transport The process in which a solute is transported from one side of a membrane to the other.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore.
GO:0042626 ATPase activity, coupled to transmembrane movement of substances Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO:0016887 ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

50 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_004938 1 1290 + 1290 Gaps:17 99.92 1292 77.69 0.0 ATP binding cassette subfamily B4 isoform 1
blastp_kegg lcl|pmum:103327260 6 1291 + 1286 Gaps:19 99.54 1297 78.00 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|pper:PRUPE_ppa000313mg 6 1291 + 1286 Gaps:23 99.38 1295 78.17 0.0 hypothetical protein
blastp_kegg lcl|vvi:100267452 8 1290 + 1283 Gaps:17 99.46 1297 77.44 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|pxb:103953074 14 1290 + 1277 Gaps:14 98.84 1296 77.67 0.0 ABC transporter B family member 11
blastp_kegg lcl|pop:POPTR_0014s10880g 8 1291 + 1284 Gaps:15 99.46 1294 75.99 0.0 POPTRDRAFT_834831 hypothetical protein
blastp_kegg lcl|pxb:103933553 2 1288 + 1287 Gaps:15 99.61 1295 75.89 0.0 ABC transporter B family member 11
blastp_kegg lcl|fve:101311221 8 1290 + 1283 Gaps:30 99.38 1283 77.73 0.0 ABC transporter B family member 4-like
blastp_kegg lcl|mdm:103405966 2 1288 + 1287 Gaps:15 99.61 1295 75.35 0.0 ABC transporter B family member 11-like
blastp_kegg lcl|gmx:100777909 6 1291 + 1286 Gaps:17 99.77 1282 78.50 0.0 ABC transporter B family member 21-like
blastp_pdb 3g5u_B 49 1288 + 1240 Gaps:37 96.65 1284 40.53 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g5u_A 49 1288 + 1240 Gaps:37 96.65 1284 40.53 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_B 49 1288 + 1240 Gaps:37 96.65 1284 40.53 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g61_A 49 1288 + 1240 Gaps:37 96.65 1284 40.53 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_B 49 1288 + 1240 Gaps:37 96.65 1284 40.53 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 3g60_A 49 1288 + 1240 Gaps:37 96.65 1284 40.53 0.0 mol:protein length:1284 Multidrug resistance protein 1a
blastp_pdb 2yl4_A 86 1282 + 1197 Gaps:50 94.62 595 50.62 1e-118 mol:protein length:595 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 4aa3_A 86 1282 + 1197 Gaps:50 89.66 619 50.99 3e-117 mol:protein length:619 ATP-BINDING CASSETTE SUB-FAMILY B MEMBER 10
blastp_pdb 3b60_D 156 1281 + 1126 Gaps:36 86.94 582 44.47 4e-85 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_pdb 3b60_C 156 1281 + 1126 Gaps:36 86.94 582 44.47 4e-85 mol:protein length:582 Lipid A export ATP-binding/permease protein m
blastp_uniprot_sprot sp|Q9FWX7|AB11B_ARATH 35 1289 + 1255 Gaps:33 97.03 1278 75.73 0.0 ABC transporter B family member 11 OS Arabidopsis thaliana GN ABCB11 PE 2 SV 1
blastp_uniprot_sprot sp|O80725|AB4B_ARATH 48 1290 + 1243 Gaps:23 96.58 1286 73.51 0.0 ABC transporter B family member 4 OS Arabidopsis thaliana GN ABCB4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M1Q9|AB21B_ARATH 43 1291 + 1249 Gaps:25 95.68 1296 75.24 0.0 ABC transporter B family member 21 OS Arabidopsis thaliana GN ABCB21 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FWX8|AB12B_ARATH 35 1289 + 1255 Gaps:31 98.98 1273 73.02 0.0 ABC transporter B family member 12 OS Arabidopsis thaliana GN ABCB12 PE 2 SV 2
blastp_uniprot_sprot sp|Q9SYI3|AB5B_ARATH 41 1289 + 1249 Gaps:26 99.59 1230 69.88 0.0 ABC transporter B family member 5 OS Arabidopsis thaliana GN ABCB5 PE 3 SV 1
blastp_uniprot_sprot sp|Q9SYI2|AB3B_ARATH 43 1290 + 1248 Gaps:38 99.92 1229 70.03 0.0 ABC transporter B family member 3 OS Arabidopsis thaliana GN ABCB3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9M0M2|AB9B_ARATH 33 1289 + 1257 Gaps:54 99.92 1236 68.66 0.0 ABC transporter B family member 9 OS Arabidopsis thaliana GN ABCB9 PE 3 SV 2
blastp_uniprot_sprot sp|Q9FHF1|AB7B_ARATH 49 1289 + 1241 Gaps:34 98.64 1248 61.82 0.0 ABC transporter B family member 7 OS Arabidopsis thaliana GN ABCB7 PE 3 SV 1
blastp_uniprot_sprot sp|Q9LJX0|AB19B_ARATH 21 1286 + 1266 Gaps:25 99.44 1252 45.06 0.0 ABC transporter B family member 19 OS Arabidopsis thaliana GN ABCB19 PE 1 SV 1
blastp_uniprot_sprot sp|Q8LPK2|AB2B_ARATH 10 1289 + 1280 Gaps:66 98.04 1273 56.17 0.0 ABC transporter B family member 2 OS Arabidopsis thaliana GN ABCB2 PE 1 SV 3

47 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 190 206 17 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 114 134 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 450 1287 838 PTHR24221:SF138 none none none
Phobius 290 312 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 313 331 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 721 745 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 966 984 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 212 233 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1007 1291 285 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 843 862 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 67 354 288 PS50929 none ABC transporter integral membrane type-1 fused domain profile. IPR011527
SMART 416 602 187 SM00382 none ATPases associated with a variety of cellular activities IPR003593
SMART 1073 1260 188 SM00382 none ATPases associated with a variety of cellular activities IPR003593
Phobius 63 87 25 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
ProSiteProfiles 389 625 237 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
SUPERFAMILY 1035 1283 249 SSF52540 none none IPR027417
Phobius 1 62 62 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
SUPERFAMILY 712 1024 313 SSF90123 none none IPR011527
ProSitePatterns 1186 1200 15 PS00211 none ABC transporters family signature. IPR017871
Phobius 863 867 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
ProSiteProfiles 1046 1283 238 PS50893 none ATP-binding cassette, ABC transporter-type domain profile. IPR003439
Gene3D 1045 1276 232 G3DSA:3.40.50.300 none none IPR027417
Gene3D 389 620 232 G3DSA:3.40.50.300 none none IPR027417
PANTHER 450 1287 838 PTHR24221 none none none
Phobius 355 720 366 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 332 354 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 715 1025 311 G3DSA:1.20.1560.10 none none none
Gene3D 53 371 319 G3DSA:1.20.1560.10 none none none
Phobius 985 1006 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 207 211 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

11 Localization

Analysis Start End Length
TMHMM 187 206 19
TMHMM 114 136 22
TMHMM 63 85 22
TMHMM 766 788 22
TMHMM 847 864 17
TMHMM 289 311 22
TMHMM 211 233 22
TMHMM 947 969 22
TMHMM 868 885 17
TMHMM 331 353 22
TMHMM 724 746 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7

0 Targeting