Protein : Qrob_P0095490.2 Q. robur
Protein Identifier  ? Qrob_P0095490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR13068//PTHR13068:SF7 - CGI-12 PROTEIN-RELATED // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 562  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003690 double-stranded DNA binding Interacting selectively and non-covalently with double-stranded DNA.
GO:0005739 mitochondrion A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

13 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_005686 4 561 + 558 Gaps:3 99.11 560 69.91 0.0 Mitochondrial transcription termination factor family protein putative
blastp_kegg lcl|rcu:RCOM_1608850 19 560 + 542 Gaps:4 96.61 561 67.53 0.0 hypothetical protein
blastp_kegg lcl|pmum:103331569 1 558 + 558 Gaps:2 98.24 568 66.31 0.0 uncharacterized LOC103331569
blastp_kegg lcl|vvi:100244389 1 559 + 559 Gaps:4 100.00 561 65.24 0.0 uncharacterized LOC100244389
blastp_kegg lcl|pper:PRUPE_ppa003515mg 1 558 + 558 Gaps:2 98.24 568 65.59 0.0 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10024277mg 1 551 + 551 Gaps:12 98.04 560 66.48 0.0 hypothetical protein
blastp_kegg lcl|cit:102608833 1 551 + 551 Gaps:12 98.04 560 66.48 0.0 uncharacterized LOC102608833
blastp_kegg lcl|pop:POPTR_0014s04440g 1 538 + 538 Gaps:4 92.87 575 64.79 0.0 mitochondrial transcription termination factor-related family protein
blastp_kegg lcl|pxb:103936890 1 558 + 558 Gaps:6 98.25 570 63.21 0.0 uncharacterized LOC103936890
blastp_kegg lcl|mdm:103428243 1 558 + 558 Gaps:6 98.25 570 63.04 0.0 uncharacterized LOC103428243
rpsblast_cdd gnl|CDD|178738 275 540 + 266 Gaps:61 42.51 487 30.43 1e-14 PLN03196 PLN03196 MOC1-like protein Provisional.
rpsblast_cdd gnl|CDD|202273 238 534 + 297 Gaps:60 68.70 345 25.74 2e-12 pfam02536 mTERF mTERF. This family contains one sequence of known function Human mitochondrial transcription termination factor (mTERF) the rest of the family consists of hypothetical proteins none of which have any functional information. mTERF is a multizipper protein possessing three putative leucine zippers one of which is bipartite. The protein binds DNA as a monomer. The leucine zippers are not implicated in a dimerisation role as in other leucine zippers.
rpsblast_kog gnl|CDD|36481 6 516 + 511 Gaps:111 99.76 413 20.39 2e-11 KOG1267 KOG1267 KOG1267 Mitochondrial transcription termination factor mTERF [Transcription General function prediction only].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 33 551 519 PTHR13068 none none none
SMART 451 482 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 255 285 31 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 483 514 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 290 321 32 SM00733 none Mitochondrial termination factor repeats IPR003690
SMART 151 181 31 SM00733 none Mitochondrial termination factor repeats IPR003690
Pfam 421 535 115 PF02536 none mTERF IPR003690
PANTHER 33 551 519 PTHR13068:SF7 none none none

0 Localization

9 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nSecLBD_A4 Qrob_Chr07 7 v_8327_222 s_1A4WGY_363 16,04 0 44,69 lod 2,6373 6,5
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Bourran2_2014_nEpiBC_A4 Qrob_Chr07 7 s_2FI9D9_500 s_1AXDMJ_325 12,26 0 34,9 lod 2,2306 6,1
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting