Protein : Qrob_P0095380.2 Q. robur
Protein Identifier  ? Qrob_P0095380.2 Organism . Name  Quercus robur
Score  100.1 Score Type  egn
Protein Description  (M=2) PTHR11564:SF5 - SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN Code Enzyme  EC:3.6.5.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 263  
Kegg Orthology  K03106
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.

42 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa004695mg 1 262 + 262 none 52.93 495 97.71 0.0 hypothetical protein
blastp_kegg lcl|pmum:103328099 1 262 + 262 none 52.93 495 97.33 0.0 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|cmo:103494661 1 262 + 262 none 52.93 495 97.33 0.0 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|tcc:TCM_027264 1 262 + 262 none 53.04 494 97.71 0.0 Signal recognition particle SRP54 subunit protein
blastp_kegg lcl|cic:CICLE_v10025458mg 1 262 + 262 none 53.04 494 96.56 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0901100 1 262 + 262 none 52.72 497 96.95 0.0 signal recognition particle 54 kD protein putative
blastp_kegg lcl|csv:101227461 1 262 + 262 none 66.84 392 96.56 0.0 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|mdm:103437288 1 262 + 262 none 52.93 495 96.95 0.0 signal recognition particle 54 kDa protein 2
blastp_kegg lcl|csv:101209324 1 262 + 262 none 52.93 495 96.56 0.0 signal recognition particle 54 kDa protein 2-like
blastp_kegg lcl|cit:102616618 1 262 + 262 none 53.04 494 95.80 0.0 signal recognition particle 54 kDa protein 2-like
blastp_pdb 2j37_W 1 262 + 262 none 51.98 504 66.03 1e-124 mol:protein length:504 SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (S
blastp_pdb 2v3c_D 5 262 + 258 Gaps:8 59.72 432 47.29 3e-74 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 2v3c_C 5 262 + 258 Gaps:8 59.72 432 47.29 3e-74 mol:protein length:432 SIGNAL RECOGNITION 54 KDA PROTEIN
blastp_pdb 3ndb_B 5 262 + 258 Gaps:8 56.83 454 47.29 4e-74 mol:protein length:454 Signal recognition 54 kDa protein
blastp_pdb 3dm5_B 1 262 + 262 Gaps:3 58.92 443 44.44 1e-71 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3dm5_A 1 262 + 262 Gaps:3 58.92 443 44.44 1e-71 mol:protein length:443 Signal recognition 54 kDa protein
blastp_pdb 3kl4_A 9 262 + 254 Gaps:4 59.12 433 40.62 6e-60 mol:protein length:433 Signal recognition 54 kDa protein
blastp_pdb 1qzx_B 9 262 + 254 Gaps:4 58.18 440 40.62 7e-60 mol:protein length:440 Signal recognition 54 kDa protein
blastp_pdb 1qzx_A 9 262 + 254 Gaps:4 58.18 440 40.62 7e-60 mol:protein length:440 Signal recognition 54 kDa protein
blastp_pdb 1qzw_G 9 262 + 254 Gaps:4 58.18 440 40.62 7e-60 mol:protein length:440 Signal recognition 54 kDa protein
blastp_uniprot_sprot sp|P49972|SR542_SOLLC 1 262 + 262 none 52.51 499 95.04 0.0 Signal recognition particle 54 kDa protein 2 OS Solanum lycopersicum PE 2 SV 1
blastp_uniprot_sprot sp|P49971|SR541_SOLLC 1 261 + 261 Gaps:1 52.82 496 92.75 3e-179 Signal recognition particle 54 kDa protein 1 OS Solanum lycopersicum PE 3 SV 1
blastp_uniprot_sprot sp|P49967|SR543_ARATH 1 262 + 262 none 52.93 495 90.08 3e-176 Signal recognition particle 54 kDa protein 3 OS Arabidopsis thaliana GN SRP-54C PE 2 SV 2
blastp_uniprot_sprot sp|P49969|SR542_HORVU 1 262 + 262 none 52.72 497 88.17 3e-172 Signal recognition particle 54 kDa protein 2 OS Hordeum vulgare GN SRP54-2 PE 2 SV 1
blastp_uniprot_sprot sp|P49968|SR541_HORVU 1 262 + 262 none 52.72 497 87.79 8e-171 Signal recognition particle 54 kDa protein 1 OS Hordeum vulgare GN SRP54-1 PE 2 SV 1
blastp_uniprot_sprot sp|P37106|SR541_ARATH 1 262 + 262 none 54.70 479 85.88 7e-166 Signal recognition particle 54 kDa protein 1 OS Arabidopsis thaliana GN SRP-54A PE 2 SV 1
blastp_uniprot_sprot sp|P49970|SR543_HORVU 1 262 + 262 Gaps:1 52.94 493 80.46 2e-152 Signal recognition particle 54 kDa protein 3 OS Hordeum vulgare GN SRP54-3 PE 2 SV 1
blastp_uniprot_sprot sp|P49966|SR542_ARATH 1 262 + 262 Gaps:2 53.12 497 78.03 1e-148 Signal recognition particle 54 kDa protein 2 OS Arabidopsis thaliana GN SRP-54B PE 3 SV 2
blastp_uniprot_sprot sp|P14576|SRP54_MOUSE 1 262 + 262 none 51.98 504 66.41 1e-124 Signal recognition particle 54 kDa protein OS Mus musculus GN Srp54 PE 1 SV 2
blastp_uniprot_sprot sp|Q5R4R6|SRP54_PONAB 1 262 + 262 none 51.98 504 66.03 4e-124 Signal recognition particle 54 kDa protein OS Pongo abelii GN SRP54 PE 2 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 5 90 86 G3DSA:1.20.120.140 none none none
SUPERFAMILY 1 94 94 SSF47364 "Reactome:REACT_15380" none IPR013822
SUPERFAMILY 95 261 167 SSF52540 none none IPR027417
Pfam 6 83 78 PF02881 "Reactome:REACT_15380" SRP54-type protein, helical bundle domain IPR013822
Gene3D 94 262 169 G3DSA:3.40.50.300 none none IPR027417
Pfam 102 262 161 PF00448 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
SMART 101 262 162 SM00962 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
PANTHER 1 262 262 PTHR11564:SF5 none none none
SMART 2 87 86 SM00963 "Reactome:REACT_15380" SRP54-type protein, helical bundle domain IPR013822
PANTHER 1 262 262 PTHR11564 none none none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting