Protein : Qrob_P0095360.2 Q. robur
Protein Identifier  ? Qrob_P0095360.2 Organism . Name  Quercus robur
Score  8.1 Score Type  egn
Protein Description  (M=1) KOG0116//KOG0358//KOG0360//KOG0363//KOG2258 - RasGAP SH3 binding protein rasputin contains NTF2 and RRM domains [Signal transduction mechanisms]. // Chaperonin complex component TCP-1 delta subunit (CCT4) [Posttranslational modification protein turnover chaperones]. // Chaperonin complex component TCP-1 alpha subunit (CCT1) [Posttranslational modification protein turnover chaperones]. // Chaperonin complex component TCP-1 beta subunit (CCT2) [Posttranslational modification protein turnover chaperones]. // Glycerophosphoryl diester phosphodiesterase [Energy production and conversion]. Code Enzyme  EC:3.1.4.46
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1159  
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0 Synonyms

7 GO Terms

Identifier Name Description
GO:0003676 nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
GO:0005524 ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0006629 lipid metabolic process The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
GO:0008081 phosphoric diester hydrolase activity Catalysis of the hydrolysis of a phosphodiester to give a phosphomonoester and a free hydroxyl group.
GO:0006071 glycerol metabolic process The chemical reactions and pathways involving glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
GO:0008889 glycerophosphodiester phosphodiesterase activity Catalysis of the reaction: a glycerophosphodiester + H2O = an alcohol + sn-glycerol 3-phosphate.
GO:0000166 nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

45 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa001847mg 612 1040 + 429 Gaps:52 60.45 756 63.24 0.0 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0046160 610 1040 + 431 Gaps:53 59.64 768 61.35 0.0 glycerophosphoryl diester phosphodiesterase putative
blastp_kegg lcl|pmum:103326598 612 1156 + 545 Gaps:90 72.19 755 56.51 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|mdm:103428020 610 1059 + 450 Gaps:56 86.70 549 60.29 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pxb:103928135 610 1040 + 431 Gaps:52 61.04 752 62.31 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pxb:103951440 610 1040 + 431 Gaps:52 61.04 752 61.00 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pxb:103940108 610 1040 + 431 Gaps:52 61.04 752 60.78 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|mdm:103430075 610 1040 + 431 Gaps:52 61.04 752 61.87 0.0 probable glycerophosphoryl diester phosphodiesterase 2
blastp_kegg lcl|pop:POPTR_0001s371701 610 1040 + 431 Gaps:54 92.32 495 59.74 4e-177 POPTRDRAFT_753230 glycerophosphoryl diester phosphodiesterase family protein
blastp_kegg lcl|cic:CICLE_v10007536mg 610 1041 + 432 Gaps:52 60.21 764 58.70 8e-176 hypothetical protein
blastp_pdb 3iyg_A 1070 1150 + 81 none 15.31 529 62.96 8e-26 mol:protein length:529 T-complex protein 1 subunit alpha
blastp_pdb 3p9e_i 1070 1150 + 81 none 14.49 559 64.20 2e-23 mol:protein length:559 T-complex protein 1 subunit alpha
blastp_pdb 3p9e_a 1070 1150 + 81 none 14.49 559 64.20 2e-23 mol:protein length:559 T-complex protein 1 subunit alpha
blastp_pdb 3p9d_I 1070 1150 + 81 none 14.49 559 64.20 2e-23 mol:protein length:559 T-complex protein 1 subunit alpha
blastp_pdb 3p9d_A 1070 1150 + 81 none 14.49 559 64.20 2e-23 mol:protein length:559 T-complex protein 1 subunit alpha
blastp_pdb 1q3q_D 1087 1150 + 64 Gaps:2 11.68 548 42.19 9e-08 mol:protein length:548 Thermosome alpha subunit
blastp_pdb 1q3q_C 1087 1150 + 64 Gaps:2 11.68 548 42.19 9e-08 mol:protein length:548 Thermosome alpha subunit
blastp_pdb 1q3q_B 1087 1150 + 64 Gaps:2 11.68 548 42.19 9e-08 mol:protein length:548 Thermosome alpha subunit
blastp_pdb 1q3q_A 1087 1150 + 64 Gaps:2 11.68 548 42.19 9e-08 mol:protein length:548 Thermosome alpha subunit
blastp_pdb 1q2v_D 1087 1150 + 64 Gaps:2 11.68 548 42.19 9e-08 mol:protein length:548 Thermosome alpha subunit
blastp_uniprot_sprot sp|Q9SZ11|GLPQ2_ARATH 610 1041 + 432 Gaps:52 60.61 759 54.78 6e-158 Probable glycerophosphoryl diester phosphodiesterase 2 OS Arabidopsis thaliana GN GPDL2 PE 1 SV 3
blastp_uniprot_sprot sp|Q7Y208|GLPQ3_ARATH 608 1041 + 434 Gaps:52 60.55 763 52.38 6e-147 Probable glycerophosphoryl diester phosphodiesterase 3 OS Arabidopsis thaliana GN GPDL3 PE 1 SV 2
blastp_uniprot_sprot sp|Q9FJ62|GLPQ1_ARATH 610 1041 + 432 Gaps:54 60.05 766 50.43 4e-144 Probable glycerophosphoryl diester phosphodiesterase 1 OS Arabidopsis thaliana GN GPDL1 PE 1 SV 1
blastp_uniprot_sprot sp|P28769|TCPA_ARATH 1070 1150 + 81 none 14.86 545 82.72 2e-33 T-complex protein 1 subunit alpha OS Arabidopsis thaliana GN CCT1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9XT06|TCPA_MONDO 1070 1150 + 81 none 14.54 557 64.20 3e-25 T-complex protein 1 subunit alpha OS Monodelphis domestica GN TCP1 PE 2 SV 1
blastp_uniprot_sprot sp|Q32L40|TCPA_BOVIN 1070 1150 + 81 none 14.57 556 62.96 5e-25 T-complex protein 1 subunit alpha OS Bos taurus GN TCP1 PE 1 SV 1
blastp_uniprot_sprot sp|Q9W790|TCPA_PALPA 1071 1150 + 80 none 14.31 559 62.50 5e-25 T-complex protein 1 subunit alpha OS Paleosuchus palpebrosus GN TCP1 PE 2 SV 1
blastp_uniprot_sprot sp|P28480|TCPA_RAT 1070 1150 + 81 none 14.57 556 61.73 8e-25 T-complex protein 1 subunit alpha OS Rattus norvegicus GN Tcp1 PE 1 SV 1
blastp_uniprot_sprot sp|P17987|TCPA_HUMAN 1070 1150 + 81 none 14.57 556 61.73 8e-25 T-complex protein 1 subunit alpha OS Homo sapiens GN TCP1 PE 1 SV 1
blastp_uniprot_sprot sp|P41988|TCPA_CAEEL 1072 1148 + 77 none 14.03 549 64.94 8e-25 T-complex protein 1 subunit alpha OS Caenorhabditis elegans GN cct-1 PE 3 SV 2

22 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 1080 1148 69 PF00118 none TCP-1/cpn60 chaperonin family IPR002423
SMART 532 604 73 SM00360 none RNA recognition motif IPR000504
PANTHER 690 725 36 PTHR23344:SF8 none none none
PANTHER 748 959 212 PTHR23344:SF8 none none none
SUPERFAMILY 610 895 286 SSF51695 none none IPR017946
SUPERFAMILY 527 624 98 SSF54928 none none none
SUPERFAMILY 1070 1147 78 SSF54849 none none none
ProSiteProfiles 612 897 286 PS51704 none GP-PDE domain profile. IPR030395
PANTHER 977 1040 64 PTHR23344:SF8 none none none
ProSiteProfiles 900 1158 259 PS51704 none GP-PDE domain profile. IPR030395
PANTHER 977 1040 64 PTHR23344 none none IPR004129
ProSiteProfiles 531 608 78 PS50102 none Eukaryotic RNA Recognition Motif (RRM) profile. IPR000504
Pfam 644 890 247 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
Pfam 907 1028 122 PF03009 none Glycerophosphoryl diester phosphodiesterase family IPR030395
SUPERFAMILY 901 1031 131 SSF51695 none none IPR017946
Gene3D 1073 1147 75 G3DSA:3.30.260.10 none none IPR027410
Gene3D 611 895 285 G3DSA:3.20.20.190 none none IPR017946
Gene3D 901 1029 129 G3DSA:3.20.20.190 none none IPR017946
Gene3D 523 607 85 G3DSA:3.30.70.330 none none IPR012677
PANTHER 748 959 212 PTHR23344 none none IPR004129
PANTHER 690 725 36 PTHR23344 none none IPR004129
Pfam 533 602 70 PF14259 none RNA recognition motif (a.k.a. RRM, RBD, or RNP domain) none

0 Localization

16 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nLBD*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 34,91 16,12 53,62 lod 2,4961 5,2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC*_A4 Qrob_Chr08 8 v_12498_318 v_12364_308 35,77 14,11 55,31 lod 2,9413 6,2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran_2000_2002_QTL3_Delta.F Qrob_Chr08 8 s_1A3EF7_1406 s_1AIWYC_607 30.17 21,01 40,21 lod 6.8553 0.055
Bourran2_2014_aSeqBC_A4 Qrob_Chr08 8 v_15999_278 v_AP13YL15_395 32,52 4,22 57,22 lod 2,7561 6,7
Bourran2_2014_nFork*_A4 Qrob_Chr08 8 PIE175 s_1CD7GJ_1398 31,22 5,24 57,24 lod 2,6724 6,8
Bourran2_2014_nLBD*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,25 0 35,55 lod 2,5951 6
Bourran2_2014_nP*_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,19 0 31,97 lod 2,8472 6
Bourran2_2014_nPriLBD_3P Qrob_Chr08 8 v_5216_549 v_11837_70 12,36 0 30,43 lod 2,5806 5,1
Bourran2_2014_nPriLBD_A4 Qrob_Chr08 8 PIE175 v_9164_159 31,85 15,39 48,29 lod 2,8308 6,8
Bourran2_2015_rEpiBC_3P Qrob_Chr08 8 s_A9TNV_543 v_11837_70 9,93 9,83 11,15 lod 3.3 7.3
Champenoux_2015_nSeqBC_A4 Qrob_Chr08 8 v_AD7YD13_501 s_1A7IED_780 43,44 43,42 43,99 lod 3.7 8.9
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf Qrob_Chr08 8 v_5216_549 v_11625_20 37.08 12,26 54,9 lod 6.5888 0.04
Bourran2_2014_nEpis*_3P Qrob_Chr08 8 s_1DA4QW_688 s_1DNI7D_820 17,96 0 37,75 lod 2,9745 7,5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9

0 Targeting