Protein : Qrob_P0090860.2 Q. robur
Protein Identifier  ? Qrob_P0090860.2 Organism . Name  Quercus robur
Score  63.0 Score Type  egn
Protein Description  (M=5) K03013 - DNA-directed RNA polymerases I, II, and III subunit RPABC1 Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 207  
Kegg Orthology  K03013
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.

37 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100259318 1 206 + 206 none 100.00 206 88.83 9e-133 DNA-directed RNA polymerases I II and III subunit RPABC1-like
blastp_kegg lcl|tcc:TCM_037836 1 206 + 206 none 100.00 206 87.86 2e-131 Eukaryotic rpb5 RNA polymerase subunit family protein isoform 1
blastp_kegg lcl|pop:POPTR_0006s16660g 1 206 + 206 none 100.00 206 87.38 3e-131 DNA-directed RNA polymerase family protein
blastp_kegg lcl|pper:PRUPE_ppa011542mg 1 206 + 206 none 100.00 206 86.89 3e-131 hypothetical protein
blastp_kegg lcl|pmum:103331533 1 206 + 206 none 100.00 206 86.41 6e-131 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_kegg lcl|mdm:103401907 1 206 + 206 none 100.00 206 85.44 7e-130 DNA-directed RNA polymerases II and IV subunit 5A
blastp_kegg lcl|cic:CICLE_v10009504mg 1 206 + 206 none 100.00 206 86.41 6e-129 hypothetical protein
blastp_kegg lcl|cit:102629940 1 206 + 206 none 100.00 206 86.41 6e-129 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_kegg lcl|pxb:103929708 1 206 + 206 none 100.00 206 84.95 1e-128 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_kegg lcl|pxb:103951867 1 206 + 206 none 100.00 206 84.95 1e-128 DNA-directed RNA polymerases II and IV subunit 5A-like
blastp_pdb 3h0g_Q 3 203 + 201 Gaps:6 98.57 210 46.38 1e-59 mol:protein length:210 DNA-directed RNA polymerases I II and III s
blastp_pdb 3h0g_E 3 203 + 201 Gaps:6 98.57 210 46.38 1e-59 mol:protein length:210 DNA-directed RNA polymerases I II and III s
blastp_pdb 4a93_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3m_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3l_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3k_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3j_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3i_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3g_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_pdb 4a3f_E 5 203 + 199 Gaps:12 97.21 215 46.41 9e-53 mol:protein length:215 DNA-DIRECTED RNA POLYMERASES I II AND III S
blastp_uniprot_sprot sp|O81098|RPB5A_ARATH 2 206 + 205 none 100.00 205 83.90 6e-126 DNA-directed RNA polymerases II and IV subunit 5A OS Arabidopsis thaliana GN NRPB5A PE 1 SV 1
blastp_uniprot_sprot sp|Q9N5K2|RPAB1_CAEEL 1 206 + 206 Gaps:5 100.00 211 56.40 5e-79 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis elegans GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|Q5R587|RPAB1_PONAB 4 205 + 202 Gaps:5 98.57 210 55.07 2e-78 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Pongo abelii GN POLR2E PE 2 SV 1
blastp_uniprot_sprot sp|A8XGH1|RPAB1_CAEBR 1 206 + 206 Gaps:5 100.00 211 55.92 3e-78 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Caenorhabditis briggsae GN rpb-5 PE 3 SV 1
blastp_uniprot_sprot sp|B0BNE2|RPAB1_RAT 4 205 + 202 Gaps:5 98.57 210 54.59 4e-78 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Rattus norvegicus GN Polr2e PE 2 SV 1
blastp_uniprot_sprot sp|Q80UW8|RPAB1_MOUSE 4 205 + 202 Gaps:5 98.57 210 54.59 4e-78 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Mus musculus GN Polr2e PE 2 SV 1
blastp_uniprot_sprot sp|P19388|RPAB1_HUMAN 4 205 + 202 Gaps:5 98.57 210 54.59 3e-77 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Homo sapiens GN POLR2E PE 1 SV 4
blastp_uniprot_sprot sp|Q2T9T3|RPAB1_BOVIN 4 205 + 202 Gaps:5 98.57 210 54.11 2e-76 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Bos taurus GN POLR2E PE 2 SV 1
blastp_uniprot_sprot sp|Q54EH2|RPAB1_DICDI 6 206 + 201 Gaps:9 99.49 197 56.63 3e-71 DNA-directed RNA polymerases I II and III subunit rpabc1 OS Dictyostelium discoideum GN polr2e PE 3 SV 2
blastp_uniprot_sprot sp|Q09191|RPAB1_SCHPO 3 203 + 201 Gaps:6 98.57 210 46.38 4e-59 DNA-directed RNA polymerases I II and III subunit RPABC1 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpb5 PE 1 SV 1

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProDom 140 205 66 PD005155 none RNA POLYMERASE DNA-DIRECTED SUBUNIT NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION II H POLYPEPTIDE IPR000783
Gene3D 134 206 73 G3DSA:3.90.940.20 none none IPR000783
SUPERFAMILY 5 134 130 SSF53036 none none IPR005571
Pfam 4 91 88 PF03871 none RNA polymerase Rpb5, N-terminal domain IPR005571
Gene3D 4 133 130 G3DSA:3.40.1340.10 none none IPR005571
PANTHER 3 206 204 PTHR10535 none none none
SUPERFAMILY 131 206 76 SSF55287 none none IPR000783
Pfam 133 206 74 PF01191 none RNA polymerase Rpb5, C-terminal domain IPR000783
ProSitePatterns 138 151 14 PS01110 none RNA polymerases H / 23 Kd subunits signature. IPR020608
PIRSF 1 206 206 PIRSF000747 none none IPR014381

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting