Protein : Qrob_P0090680.2 Q. robur
Protein Identifier  ? Qrob_P0090680.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K02927 - large subunit ribosomal protein L40e Gene Prediction Quality  validated
Protein length 

Sequence

Length: 129  
Kegg Orthology  K02927
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005515 protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

48 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015479 1 128 + 128 none 84.77 151 100.00 3e-89 Ubiquitin supergroup Ribosomal protein L40e
blastp_kegg lcl|pda:103697899 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin-60S ribosomal protein L40
blastp_kegg lcl|pda:103718877 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin-60S ribosomal protein L40
blastp_kegg lcl|pda:103706575 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin-60S ribosomal protein L40
blastp_kegg lcl|rcu:RCOM_0293400 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin putative
blastp_kegg lcl|rcu:RCOM_1204410 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin putative
blastp_kegg lcl|cmo:103482990 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin-60S ribosomal protein L40
blastp_kegg lcl|csv:101209137 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin-60S ribosomal protein L40-like
blastp_kegg lcl|csv:101205082 1 128 + 128 none 100.00 128 100.00 9e-89 ubiquitin-60S ribosomal protein L40-like
blastp_kegg lcl|pvu:PHAVU_001G191700g 1 128 + 128 none 100.00 128 100.00 9e-89 hypothetical protein
blastp_pdb 3u5i_m 1 128 + 128 none 100.00 128 90.62 1e-81 mol:protein length:128 60S ribosomal protein L40
blastp_pdb 3u5e_m 1 128 + 128 none 100.00 128 90.62 1e-81 mol:protein length:128 60S ribosomal protein L40
blastp_pdb 4adx_5 1 128 + 128 none 99.22 129 82.81 8e-74 mol:protein length:129 RPL40E
blastp_pdb 4a1d_K 1 128 + 128 none 99.22 129 82.81 8e-74 mol:protein length:129 UBIQUITIN-60S RIBOSOMAL PROTEIN L40
blastp_pdb 4a1b_K 1 128 + 128 none 99.22 129 82.81 8e-74 mol:protein length:129 UBIQUITIN-60S RIBOSOMAL PROTEIN L40
blastp_pdb 4a19_K 1 128 + 128 none 99.22 129 82.81 8e-74 mol:protein length:129 UBIQUITIN-60S RIBOSOMAL PROTEIN L40
blastp_pdb 4a18_K 1 128 + 128 none 99.22 129 82.81 8e-74 mol:protein length:129 UBIQUITIN-60S RIBOSOMAL PROTEIN L40
blastp_pdb 3olm_D 1 76 + 76 none 96.20 79 97.37 4e-48 mol:protein length:79 Ubiquitin
blastp_pdb 3cmm_D 1 76 + 76 none 100.00 76 97.37 5e-48 mol:protein length:76 Ubiquitin
blastp_pdb 3cmm_B 1 76 + 76 none 100.00 76 97.37 5e-48 mol:protein length:76 Ubiquitin
blastp_uniprot_sprot sp|P49636|RL40_NICSY 1 128 + 128 none 100.00 128 99.22 8e-90 Ubiquitin-60S ribosomal protein L40 OS Nicotiana sylvestris GN UBICEP52-7 PE 2 SV 2
blastp_uniprot_sprot sp|Q42202|RL40B_ARATH 1 128 + 128 none 100.00 128 99.22 2e-89 Ubiquitin-60S ribosomal protein L40-2 OS Arabidopsis thaliana GN RPL40B PE 1 SV 2
blastp_uniprot_sprot sp|B9DHA6|RL40A_ARATH 1 128 + 128 none 100.00 128 99.22 2e-89 Ubiquitin-60S ribosomal protein L40-1 OS Arabidopsis thaliana GN RPL40A PE 1 SV 1
blastp_uniprot_sprot sp|P0CH35|RL40B_ORYSJ 1 128 + 128 none 99.22 129 99.22 3e-89 Ubiquitin-60S ribosomal protein L40-2 OS Oryza sativa subsp. japonica GN Ub-CEP52-2 PE 3 SV 1
blastp_uniprot_sprot sp|P0CH34|RL40A_ORYSJ 1 128 + 128 none 99.22 129 99.22 3e-89 Ubiquitin-60S ribosomal protein L40-1 OS Oryza sativa subsp. japonica GN Ub-CEP52-1 PE 2 SV 1
blastp_uniprot_sprot sp|P51423|RL40_BRARP 1 128 + 128 none 100.00 128 99.22 4e-89 Ubiquitin-60S ribosomal protein L40 OS Brassica rapa subsp. pekinensis PE 2 SV 2
blastp_uniprot_sprot sp|P0CH10|RL403_CHLRE 1 128 + 128 none 100.00 128 94.53 2e-85 Ubiquitin-60S ribosomal protein L40 OS Chlamydomonas reinhardtii GN UBI3 PE 1 SV 1
blastp_uniprot_sprot sp|P0CH11|RL401_CHLRE 1 128 + 128 none 100.00 128 94.53 2e-85 Ubiquitin-60S ribosomal protein L40 OS Chlamydomonas reinhardtii GN UBI1 PE 1 SV 1
blastp_uniprot_sprot sp|P49633|RL40_ACACA 1 128 + 128 none 100.00 128 91.41 8e-83 Ubiquitin-60S ribosomal protein L40 OS Acanthamoeba castellanii PE 2 SV 2
blastp_uniprot_sprot sp|P0C276|RL40_SHEEP 1 128 + 128 none 100.00 128 92.19 2e-82 Ubiquitin-60S ribosomal protein L40 OS Ovis aries GN UBA52 PE 2 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
ProSitePatterns 27 52 26 PS00299 none Ubiquitin domain signature. IPR019954
SMART 1 72 72 SM00213 none Ubiquitin homologues IPR000626
Pfam 6 74 69 PF00240 none Ubiquitin family IPR000626
PRINTS 11 31 21 PR00348 none Ubiquitin signature IPR019956
PRINTS 53 74 22 PR00348 none Ubiquitin signature IPR019956
PRINTS 32 52 21 PR00348 none Ubiquitin signature IPR019956
PANTHER 1 128 128 PTHR10666 none none none
SUPERFAMILY 76 127 52 SSF57829 none none IPR011332
ProSiteProfiles 1 76 76 PS50053 none Ubiquitin domain profile. IPR000626
Gene3D 1 85 85 G3DSA:3.10.20.90 none none none
SUPERFAMILY 1 76 76 SSF54236 none none IPR029071
Pfam 78 128 51 PF01020 none Ribosomal L40e family IPR001975

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting