Protein : Qrob_P0090490.2 Q. robur
Protein Identifier  ? Qrob_P0090490.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) PTHR11564:SF7 - SIGNAL RECOGNITION PARTICLE PROTEIN Code Enzyme  EC:3.6.5.4
Gene Prediction Quality  validated Protein length 

Sequence

Length: 273  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0006614 SRP-dependent cotranslational protein targeting to membrane The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
GO:0048500 signal recognition particle A complex of protein and RNA which facilitates translocation of proteins across membranes.
GO:0003924 GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.

41 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|obr:102710065 83 225 + 143 Gaps:39 29.61 959 64.79 1e-38 signal recognition particle 54 kDa protein chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa003448mg 1 225 + 225 Gaps:53 41.29 574 56.96 2e-33 hypothetical protein
blastp_kegg lcl|pmum:103341764 1 225 + 225 Gaps:53 41.29 574 56.54 2e-33 signal recognition particle 54 kDa protein chloroplastic
blastp_kegg lcl|rcu:RCOM_0292970 1 225 + 225 Gaps:54 40.91 572 55.98 2e-33 signal recognition particle protein putative
blastp_kegg lcl|pxb:103956451 1 225 + 225 Gaps:54 41.39 575 56.72 4e-33 signal recognition particle 54 kDa protein chloroplastic-like
blastp_kegg lcl|mdm:103413496 1 225 + 225 Gaps:52 41.39 575 52.94 5e-33 signal recognition particle 54 kDa protein chloroplastic-like
blastp_kegg lcl|pxb:103934964 1 225 + 225 Gaps:50 41.39 575 56.30 5e-33 signal recognition particle 54 kDa protein chloroplastic-like
blastp_kegg lcl|pxb:103929480 1 225 + 225 Gaps:48 41.39 575 52.52 5e-33 signal recognition particle 54 kDa protein chloroplastic-like
blastp_kegg lcl|pxb:103966430 1 225 + 225 Gaps:54 41.39 575 56.30 5e-33 signal recognition particle 54 kDa protein chloroplastic-like
blastp_kegg lcl|pxb:103966414 1 225 + 225 Gaps:54 41.39 575 56.30 5e-33 signal recognition particle 54 kDa protein chloroplastic-like
blastp_pdb 2j28_9 156 225 + 70 none 16.28 430 54.29 4e-19 mol:protein length:430 SIGNAL RECOGNITION PARTICLE 54
blastp_pdb 2xxa_C 156 225 + 70 none 16.17 433 54.29 4e-19 mol:protein length:433 SIGNAL RECOGNITION PARTICLE PROTEIN
blastp_pdb 2xxa_A 156 225 + 70 none 16.17 433 54.29 4e-19 mol:protein length:433 SIGNAL RECOGNITION PARTICLE PROTEIN
blastp_pdb 2ng1_A 158 224 + 67 none 22.87 293 58.21 3e-18 mol:protein length:293 SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
blastp_pdb 1ffh_A 158 224 + 67 none 22.79 294 58.21 3e-18 mol:protein length:294 FFH
blastp_pdb 1ry1_U 158 224 + 67 none 22.64 296 58.21 4e-18 mol:protein length:296 Signal recognition particle protein
blastp_pdb 1jpn_A 158 224 + 67 none 22.64 296 58.21 4e-18 mol:protein length:296 SIGNAL RECOGNITION PARTICLE PROTEIN
blastp_pdb 1jpn_B 158 224 + 67 none 22.64 296 58.21 4e-18 mol:protein length:296 SIGNAL RECOGNITION PARTICLE PROTEIN
blastp_pdb 1jpj_A 158 224 + 67 none 22.64 296 58.21 4e-18 mol:protein length:296 SIGNAL RECOGNITION PARTICLE PROTEIN
blastp_pdb 3ng1_B 158 224 + 67 none 22.79 294 58.21 4e-18 mol:protein length:294 SIGNAL SEQUENCE RECOGNITION PROTEIN FFH
blastp_uniprot_sprot sp|P37107|SR54C_ARATH 83 225 + 143 none 19.15 564 87.96 3e-33 Signal recognition particle 54 kDa protein chloroplastic OS Arabidopsis thaliana GN FFC PE 1 SV 1
blastp_uniprot_sprot sp|P74214|SRP54_SYNY3 143 225 + 83 Gaps:1 17.43 482 60.71 1e-21 Signal recognition particle protein OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN ffh PE 3 SV 1
blastp_uniprot_sprot sp|Q55311|SRP54_SYNE7 156 224 + 69 none 14.23 485 68.12 3e-21 Signal recognition particle protein OS Synechococcus elongatus (strain PCC 7942) GN ffh PE 3 SV 1
blastp_uniprot_sprot sp|P37105|SRP54_BACSU 156 224 + 69 none 15.47 446 56.52 7e-19 Signal recognition particle protein OS Bacillus subtilis (strain 168) GN ffh PE 1 SV 1
blastp_uniprot_sprot sp|P0AGD7|SRP54_ECOLI 156 225 + 70 none 15.45 453 54.29 2e-18 Signal recognition particle protein OS Escherichia coli (strain K12) GN ffh PE 1 SV 1
blastp_uniprot_sprot sp|P0AGD8|SRP54_ECOL6 156 225 + 70 none 15.45 453 54.29 2e-18 Signal recognition particle protein OS Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN ffh PE 3 SV 1
blastp_uniprot_sprot sp|P0AGD9|SRP54_ECO57 156 225 + 70 none 15.45 453 54.29 2e-18 Signal recognition particle protein OS Escherichia coli O157:H7 GN ffh PE 3 SV 1
blastp_uniprot_sprot sp|P44518|SRP54_HAEIN 156 225 + 70 none 15.15 462 57.14 2e-18 Signal recognition particle protein OS Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN ffh PE 3 SV 1
blastp_uniprot_sprot sp|Q54431|SRP54_STRMU 156 225 + 70 none 13.57 516 55.71 1e-17 Signal recognition particle protein OS Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN ffh PE 3 SV 3
blastp_uniprot_sprot sp|Q92J55|SRP54_RICCN 158 255 + 98 Gaps:4 20.94 449 46.81 1e-17 Signal recognition particle protein OS Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN ffh PE 3 SV 1

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 158 225 68 PTHR11564:SF7 none none IPR004780
PANTHER 158 225 68 PTHR11564 none none none
Gene3D 83 122 40 G3DSA:1.20.120.140 none none none
SMART 112 239 128 SM00962 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
Pfam 158 226 69 PF00448 "Reactome:REACT_15380" SRP54-type protein, GTPase domain IPR000897
Gene3D 158 226 69 G3DSA:3.40.50.300 none none IPR027417
SUPERFAMILY 157 228 72 SSF52540 none none IPR027417

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 98   Mitochondrion 3 0.048 0.812 NON-PLANT 98