Protein : Qrob_P0090340.2 Q. robur
Protein Identifier  ? Qrob_P0090340.2 Organism . Name  Quercus robur
Score  95.5 Score Type  egn
Protein Description  (M=2) PF09177 - Syntaxin 6, N-terminal Gene Prediction Quality  validated
Protein length 

Sequence

Length: 326  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0048193 Golgi vesicle transport The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles.

11 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101293018 1 318 + 318 Gaps:10 81.27 379 66.56 2e-140 uncharacterized protein LOC101293018
blastp_kegg lcl|pper:PRUPE_ppa022207mg 1 318 + 318 Gaps:6 80.70 399 64.29 9e-135 hypothetical protein
blastp_kegg lcl|tcc:TCM_022592 1 319 + 319 Gaps:5 80.51 390 65.29 1e-134 Syntaxin/t-SNARE family protein putative
blastp_kegg lcl|cit:102623653 4 318 + 315 Gaps:2 82.37 380 62.30 1e-134 uncharacterized LOC102623653
blastp_kegg lcl|pmum:103339674 1 318 + 318 Gaps:6 81.11 397 64.29 2e-132 uncharacterized LOC103339674
blastp_kegg lcl|rcu:RCOM_0517120 1 318 + 318 Gaps:10 81.05 380 63.64 9e-131 hypothetical protein
blastp_kegg lcl|pop:POPTR_0005s14560g 1 318 + 318 Gaps:3 81.40 387 61.90 1e-127 hypothetical protein
blastp_kegg lcl|pop:POPTR_0004s08920g 1 320 + 320 Gaps:4 99.68 317 59.18 4e-125 POPTRDRAFT_555939 hypothetical protein
blastp_kegg lcl|pxb:103929464 1 319 + 319 Gaps:27 68.41 459 64.01 4e-125 uncharacterized LOC103929464
blastp_kegg lcl|mdm:103452461 1 319 + 319 Gaps:27 81.56 385 62.74 6e-122 uncharacterized LOC103452461
rpsblast_cdd gnl|CDD|192222 11 113 + 103 Gaps:9 100.00 96 35.42 1e-15 pfam09177 Syntaxin-6_N Syntaxin 6 N-terminal. Members of this family which are found in the amino terminus of various SNARE proteins adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined though it is known that they regulate the SNARE motif as well as mediate various protein-protein interactions involved in membrane-transport.

3 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 11 113 103 PF09177 "Reactome:REACT_11184" Syntaxin 6, N-terminal IPR015260
Gene3D 8 118 111 G3DSA:1.20.58.90 none none none
SUPERFAMILY 11 117 107 SSF47661 none none IPR010989

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting