Protein : Qrob_P0090290.2 Q. robur
Protein Identifier  ? Qrob_P0090290.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) K02865 - large subunit ribosomal protein L10Ae Gene Prediction Quality  validated
Protein length 

Sequence

Length: 235  
Kegg Orthology  K02865
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003723 RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

38 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pda:103724272 1 234 + 234 Gaps:18 100.00 216 88.89 4e-128 60S ribosomal protein L10a-2
blastp_kegg lcl|pda:103719481 1 234 + 234 Gaps:18 100.00 216 88.89 4e-128 60S ribosomal protein L10a-2
blastp_kegg lcl|mus:103980194 1 234 + 234 Gaps:3 100.00 237 81.43 2e-126 60S ribosomal protein L10a-1-like isoform X1
blastp_kegg lcl|vvi:100263858 1 234 + 234 Gaps:18 100.00 216 91.67 1e-125 60S ribosomal protein L10a-1-like
blastp_kegg lcl|gmx:100527763 1 234 + 234 Gaps:18 100.00 216 91.67 1e-125 uncharacterized LOC100527763
blastp_kegg lcl|pda:103699891 1 234 + 234 Gaps:18 100.00 216 89.81 2e-125 60S ribosomal protein L10a-1-like
blastp_kegg lcl|vvi:100266487 1 234 + 234 Gaps:18 100.00 216 91.67 2e-125 60S ribosomal protein L10a-1-like
blastp_kegg lcl|mus:103981132 1 234 + 234 Gaps:18 100.00 216 89.35 1e-123 60S ribosomal protein L10a-1-like
blastp_kegg lcl|mus:103980850 1 234 + 234 Gaps:18 100.00 216 88.89 3e-123 60S ribosomal protein L10a-1-like
blastp_kegg lcl|mus:104000241 1 234 + 234 Gaps:18 100.00 216 88.43 1e-122 60S ribosomal protein L10a-1
blastp_pdb 3izr_A 1 234 + 234 Gaps:18 100.00 216 83.33 3e-117 mol:protein length:216 60S ribosomal protein L1 (L1p)
blastp_pdb 3o5h_A 1 234 + 234 Gaps:19 100.00 217 61.29 2e-75 mol:protein length:217 60S ribosomal protein L1
blastp_pdb 3o58_A 1 234 + 234 Gaps:19 100.00 217 61.29 2e-75 mol:protein length:217 60S ribosomal protein L1
blastp_pdb 3izs_A 1 234 + 234 Gaps:19 100.00 217 61.29 2e-75 mol:protein length:217 60S ribosomal protein rpL1 (L1p)
blastp_pdb 1s1i_A 1 234 + 234 Gaps:19 100.00 217 61.29 2e-75 mol:protein length:217 60S ribosomal protein L1
blastp_pdb 3jyw_A 4 233 + 230 Gaps:19 100.00 213 60.56 5e-72 mol:protein length:213 60S ribosomal protein L1
blastp_pdb 3j0q_B 4 233 + 230 Gaps:19 100.00 213 60.56 5e-72 mol:protein length:213 Ribosomal protein L10a
blastp_pdb 3j0p_B 4 233 + 230 Gaps:19 100.00 213 60.56 5e-72 mol:protein length:213 Ribosomal protein L10a
blastp_pdb 3j0o_B 4 233 + 230 Gaps:19 100.00 213 60.56 5e-72 mol:protein length:213 Ribosomal protein L10a
blastp_pdb 3j0l_B 4 233 + 230 Gaps:19 100.00 213 60.56 5e-72 mol:protein length:213 Ribosomal protein L10a
blastp_uniprot_sprot sp|Q8VZB9|R10A1_ARATH 1 234 + 234 Gaps:18 100.00 216 87.50 1e-117 60S ribosomal protein L10a-1 OS Arabidopsis thaliana GN RPL10AA PE 2 SV 1
blastp_uniprot_sprot sp|P59231|R10A3_ARATH 1 234 + 234 Gaps:19 100.00 217 87.56 4e-117 60S ribosomal protein L10a-3 OS Arabidopsis thaliana GN RPL10AC PE 2 SV 1
blastp_uniprot_sprot sp|P59230|R10A2_ARATH 1 234 + 234 Gaps:18 100.00 216 85.65 6e-116 60S ribosomal protein L10a-2 OS Arabidopsis thaliana GN RPL10AB PE 2 SV 1
blastp_uniprot_sprot sp|Q963B6|RL10A_SPOFR 2 234 + 233 Gaps:18 99.08 217 67.44 1e-85 60S ribosomal protein L10a OS Spodoptera frugiperda GN RpL10A PE 2 SV 1
blastp_uniprot_sprot sp|Q9VTP4|R10AB_DROME 2 234 + 233 Gaps:18 99.08 217 66.51 9e-85 60S ribosomal protein L10a-2 OS Drosophila melanogaster GN RpL10Ab PE 1 SV 2
blastp_uniprot_sprot sp|Q9N4I4|RL10A_CAEEL 1 234 + 234 Gaps:18 100.00 216 62.96 2e-83 60S ribosomal protein L10a OS Caenorhabditis elegans GN rpl-10a PE 3 SV 1
blastp_uniprot_sprot sp|Q7ZYS8|RL10A_XENLA 2 234 + 233 Gaps:18 99.08 217 65.58 4e-83 60S ribosomal protein L10a OS Xenopus laevis GN rpl10a PE 2 SV 1
blastp_uniprot_sprot sp|Q6PC69|RL10A_DANRE 1 234 + 234 Gaps:18 100.00 216 65.28 1e-82 60S ribosomal protein L10a OS Danio rerio GN rpl10a PE 2 SV 1
blastp_uniprot_sprot sp|P62907|RL10A_RAT 2 234 + 233 Gaps:18 99.08 217 63.72 4e-81 60S ribosomal protein L10a OS Rattus norvegicus GN Rpl10a PE 1 SV 2
blastp_uniprot_sprot sp|P62906|RL10A_HUMAN 2 234 + 233 Gaps:18 99.08 217 63.72 4e-81 60S ribosomal protein L10a OS Homo sapiens GN RPL10A PE 1 SV 2

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 20 230 211 PF00687 none Ribosomal protein L1p/L10e family IPR028364
PANTHER 148 234 87 PTHR23105 none none none
PANTHER 1 129 129 PTHR23105 none none none
SUPERFAMILY 16 234 219 SSF56808 none none IPR023674
Gene3D 62 169 108 G3DSA:3.40.50.790 none none IPR016095
PANTHER 148 234 87 PTHR23105:SF31 none none none
PANTHER 1 129 129 PTHR23105:SF31 none none none
Gene3D 170 234 65 G3DSA:3.30.190.20 none none IPR016094
Gene3D 6 60 55 G3DSA:3.30.190.20 none none IPR016094
PIRSF 1 234 234 PIRSF002155 none none IPR002143

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting