Protein : Qrob_P0089890.2 Q. robur
Protein Identifier  ? Qrob_P0089890.2 Organism . Name  Quercus robur
Score  99.0 Score Type  egn
Protein Description  (M=1) K16252 - DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 1206  
Kegg Orthology  K16252
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa000410mg 13 1205 + 1193 Gaps:13 100.00 1200 80.08 0.0 hypothetical protein
blastp_kegg lcl|pmum:103320736 13 1205 + 1193 Gaps:25 100.00 1212 79.37 0.0 DNA-directed RNA polymerases IV and V subunit 2-like
blastp_kegg lcl|cic:CICLE_v10018562mg 13 1205 + 1193 Gaps:11 100.00 1198 79.22 0.0 hypothetical protein
blastp_kegg lcl|cit:102625916 13 1205 + 1193 Gaps:11 100.00 1198 79.22 0.0 DNA-directed RNA polymerases IV and V subunit 2-like
blastp_kegg lcl|pxb:103938971 13 1204 + 1192 Gaps:10 99.92 1203 79.20 0.0 DNA-directed RNA polymerases IV and V subunit 2-like
blastp_kegg lcl|mdm:103421011 13 1204 + 1192 Gaps:10 99.92 1203 79.20 0.0 DNA-directed RNA polymerases IV and V subunit 2-like
blastp_kegg lcl|mdm:103442053 13 1204 + 1192 Gaps:10 99.92 1203 79.12 0.0 DNA-directed RNA polymerases IV and V subunit 2-like
blastp_kegg lcl|csv:101212812 15 1205 + 1191 Gaps:11 99.92 1197 78.34 0.0 DNA-directed RNA polymerase D subunit 2a-like
blastp_kegg lcl|fve:101312289 13 1205 + 1193 Gaps:10 100.00 1201 77.52 0.0 DNA-directed RNA polymerase D subunit 2a-like
blastp_kegg lcl|cmo:103493748 15 1205 + 1191 Gaps:11 99.92 1197 78.43 0.0 DNA-directed RNA polymerases IV and V subunit 2-like
blastp_pdb 4a93_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3m_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3l_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3k_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3j_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3i_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3g_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3f_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3e_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3d_B 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|Q9LK40|NRPD2_ARATH 36 1205 + 1170 Gaps:45 99.74 1172 70.92 0.0 DNA-directed RNA polymerases IV and V subunit 2 OS Arabidopsis thaliana GN NRPD2 PE 1 SV 1
blastp_uniprot_sprot sp|Q9LV32|RPD2B_ARATH 38 1205 + 1168 Gaps:87 100.00 1119 71.22 0.0 DNA-directed RNA polymerase D subunit 2b OS Arabidopsis thaliana GN NRPD2b PE 2 SV 1
blastp_uniprot_sprot sp|P38420|NRPB2_ARATH 69 1203 + 1135 Gaps:107 96.63 1188 36.41 0.0 DNA-directed RNA polymerase II subunit 2 OS Arabidopsis thaliana GN NRPB2 PE 1 SV 2
blastp_uniprot_sprot sp|Q42877|RPB2_SOLLC 42 1203 + 1162 Gaps:107 98.66 1191 35.66 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Solanum lycopersicum GN RPB2 PE 2 SV 1
blastp_uniprot_sprot sp|Q54J75|RPB2_DICDI 69 1203 + 1135 Gaps:134 97.52 1170 36.90 0.0 DNA-directed RNA polymerase II subunit rpb2 OS Dictyostelium discoideum GN polr2b PE 3 SV 1
blastp_uniprot_sprot sp|Q8SR75|RPB2_ENCCU 69 1201 + 1133 Gaps:122 98.60 1141 36.09 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Encephalitozoon cuniculi (strain GB-M1) GN RPB2 PE 3 SV 1
blastp_uniprot_sprot sp|P08518|RPB2_YEAST 69 1202 + 1134 Gaps:149 96.65 1224 35.33 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPB2 PE 1 SV 2
blastp_uniprot_sprot sp|Q753Q4|RPB2_ASHGO 69 1202 + 1134 Gaps:147 96.97 1222 35.70 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPB2 PE 3 SV 1
blastp_uniprot_sprot sp|P30876|RPB2_HUMAN 36 1197 + 1162 Gaps:135 98.89 1174 36.61 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Homo sapiens GN POLR2B PE 1 SV 1
blastp_uniprot_sprot sp|Q8CFI7|RPB2_MOUSE 36 1197 + 1162 Gaps:135 98.89 1174 36.52 0.0 DNA-directed RNA polymerase II subunit RPB2 OS Mus musculus GN Polr2b PE 2 SV 2

18 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 505 564 60 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
Pfam 75 486 412 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
ProSitePatterns 955 967 13 PS01166 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases beta chain signature. IPR007121
Pfam 675 722 48 PF04567 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 5 IPR007647
Pfam 285 427 143 PF04561 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 2 IPR007642
PANTHER 41 1205 1165 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
SUPERFAMILY 59 1202 1144 SSF64484 none none none
PANTHER 41 1205 1165 PTHR20856:SF21 none none none
Gene3D 830 947 118 G3DSA:2.40.50.150 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR014724
Gene3D 265 417 153 G3DSA:3.90.1110.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007642
Gene3D 725 814 90 G3DSA:3.90.1100.10 none none none
Gene3D 418 577 160 G3DSA:3.90.1100.10 none none none
Gene3D 69 249 181 G3DSA:3.90.1100.10 none none none
Pfam 731 1102 372 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
Gene3D 948 1080 133 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Gene3D 815 829 15 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Pfam 599 661 63 PF04566 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 4 IPR007646
Pfam 1104 1202 99 PF04560 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 7 IPR007641

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting