Protein : Qrob_P0089760.2 Q. robur
Protein Identifier  ? Qrob_P0089760.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K15304 - Ran-binding protein 3 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 420  
Kegg Orthology  K15304
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0005643 nuclear pore Any of the numerous similar discrete openings in the nuclear envelope of a eukaryotic cell, where the inner and outer nuclear membranes are joined.
GO:0046907 intracellular transport The directed movement of substances within a cell.

32 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa006361mg 1 419 + 419 Gaps:30 100.00 415 67.23 5e-173 hypothetical protein
blastp_kegg lcl|rcu:RCOM_0980270 1 419 + 419 Gaps:45 98.88 445 63.18 2e-170 ran-binding protein putative
blastp_kegg lcl|cit:102623478 1 419 + 419 Gaps:66 100.00 437 62.47 2e-166 RANBP2-like and GRIP domain-containing protein 5/6-like
blastp_kegg lcl|vvi:100265296 1 419 + 419 Gaps:10 100.00 417 69.30 2e-165 uncharacterized LOC100265296
blastp_kegg lcl|cic:CICLE_v10025626mg 1 419 + 419 Gaps:66 100.00 437 62.24 2e-165 hypothetical protein
blastp_kegg lcl|tcc:TCM_028672 1 418 + 418 Gaps:48 99.78 459 60.92 3e-164 NUP50 protein putative
blastp_kegg lcl|pop:POPTR_0001s17930g 1 419 + 419 Gaps:66 100.00 469 59.06 7e-164 POPTRDRAFT_797471 Ran-binding protein 1 domain-containing
blastp_kegg lcl|pmum:103327972 1 419 + 419 Gaps:30 100.00 415 66.02 6e-161 ran-specific GTPase-activating protein 2
blastp_kegg lcl|gmx:100816316 1 419 + 419 Gaps:54 100.00 453 60.49 2e-157 E3 SUMO-protein ligase RanBP2-like
blastp_kegg lcl|gmx:100797325 1 419 + 419 Gaps:54 100.00 451 60.98 1e-155 brefeldin A resistance protein-like
blastp_pdb 2crf_A 261 372 + 112 Gaps:12 74.67 150 39.29 3e-11 mol:protein length:150 RAN binding protein 3
blastp_pdb 2y8f_D 279 372 + 94 Gaps:7 70.29 138 37.11 4e-08 mol:protein length:138 RAN-BINDING PROTEIN 3
blastp_pdb 2y8f_C 279 372 + 94 Gaps:7 70.29 138 37.11 4e-08 mol:protein length:138 RAN-BINDING PROTEIN 3
blastp_pdb 2y8f_B 279 372 + 94 Gaps:7 70.29 138 37.11 4e-08 mol:protein length:138 RAN-BINDING PROTEIN 3
blastp_pdb 2y8f_A 279 372 + 94 Gaps:7 70.29 138 37.11 4e-08 mol:protein length:138 RAN-BINDING PROTEIN 3
blastp_pdb 3m1i_B 280 383 + 104 Gaps:5 56.02 191 30.84 5e-07 mol:protein length:191 Ran-specific GTPase-activating protein 1
blastp_pdb 2y8g_B 279 372 + 94 Gaps:7 70.29 138 35.05 1e-06 mol:protein length:138 RAN-BINDING PROTEIN 3
blastp_pdb 2y8g_A 279 372 + 94 Gaps:7 70.29 138 35.05 1e-06 mol:protein length:138 RAN-BINDING PROTEIN 3
blastp_uniprot_sprot sp|Q7Z3J3|RGPD4_HUMAN 209 414 + 206 Gaps:102 24.63 1758 30.72 2e-10 RanBP2-like and GRIP domain-containing protein 4 OS Homo sapiens GN RGPD4 PE 2 SV 3
blastp_uniprot_sprot sp|P0DJD0|RGPD1_HUMAN 277 414 + 138 Gaps:25 8.52 1748 31.54 4e-10 RANBP2-like and GRIP domain-containing protein 1 OS Homo sapiens GN RGPD1 PE 2 SV 1
blastp_uniprot_sprot sp|Q9H6Z4|RANB3_HUMAN 279 372 + 94 Gaps:7 17.11 567 38.14 4e-10 Ran-binding protein 3 OS Homo sapiens GN RANBP3 PE 1 SV 1
blastp_uniprot_sprot sp|P0DJD1|RGPD2_HUMAN 277 414 + 138 Gaps:25 8.49 1756 31.54 5e-10 RANBP2-like and GRIP domain-containing protein 2 OS Homo sapiens GN RGPD2 PE 2 SV 1
blastp_uniprot_sprot sp|P49792|RBP2_HUMAN 213 414 + 202 Gaps:69 11.35 3224 29.78 6e-10 E3 SUMO-protein ligase RanBP2 OS Homo sapiens GN RANBP2 PE 1 SV 2
blastp_uniprot_sprot sp|P40517|YRB2_YEAST 279 347 + 69 Gaps:4 21.10 327 43.48 6e-10 Ran-specific GTPase-activating protein 2 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN YRB2 PE 1 SV 1
blastp_uniprot_sprot sp|Q4R4T9|RANB3_MACFA 279 372 + 94 Gaps:7 19.44 499 38.14 6e-10 Ran-binding protein 3 OS Macaca fascicularis GN RANBP3 PE 2 SV 1
blastp_uniprot_sprot sp|O14715|RGPD8_HUMAN 213 414 + 202 Gaps:69 20.74 1765 30.60 6e-10 RANBP2-like and GRIP domain-containing protein 8 OS Homo sapiens GN RGPD8 PE 1 SV 2
blastp_uniprot_sprot sp|Q99666|RGPD5_HUMAN 213 414 + 202 Gaps:69 20.74 1765 30.60 6e-10 RANBP2-like and GRIP domain-containing protein 5/6 OS Homo sapiens GN RGPD5 PE 1 SV 3
blastp_uniprot_sprot sp|Q9CT10|RANB3_MOUSE 279 372 + 94 Gaps:7 19.76 491 38.14 7e-10 Ran-binding protein 3 OS Mus musculus GN Ranbp3 PE 1 SV 2
rpsblast_cdd gnl|CDD|176272 282 401 + 120 Gaps:6 100.00 122 39.34 9e-25 cd00835 RanBD Ran-binding domain. Ran-binding domain This domain of approximately 150 residues shares structural similarity to the PH domain but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
rpsblast_cdd gnl|CDD|197549 280 396 + 117 Gaps:7 92.31 130 28.33 4e-15 smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 190 418 229 PTHR23138 none none none
PANTHER 80 135 56 PTHR23138 none none none
PANTHER 190 418 229 PTHR23138:SF46 none none none
PANTHER 80 135 56 PTHR23138:SF46 none none none
Pfam 285 397 113 PF00638 none RanBP1 domain IPR000156
SMART 270 399 130 SM00160 none Ran-binding domain IPR000156
Gene3D 280 403 124 G3DSA:2.30.29.30 none none IPR011993
ProSiteProfiles 276 405 130 PS50196 none Ran binding domain type 1 profile. IPR000156
SUPERFAMILY 277 403 127 SSF50729 none none none
Pfam 12 78 67 PF08911 none NUP50 (Nucleoporin 50 kDa) IPR015007

0 Localization

19 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03
Bourran2_2015_nEpis_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 34,94 34,88 37,45 lod 3.1 7
Bourran2_2015_nSecLBD_A4 Qrob_Chr09 9 v_15847_485 v_8329_369 35,81 34,88 37,45 lod 4.4 10.4
Bourran1_2003_QTL1_peak_Bud_burst_3P Qrob_Chr02 2 s_1AR8KI_1183 s_1B0QB1_473 22 6 41 lod 4,2 11,5
Bourran1_2004_QTL3_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 46 lod 2,9 6,4
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5
Champenoux_2015_nEpis_A4 Qrob_Chr02 2 s_1BAGIZ_823 s_1BN4CB_644 23,06 23,06 23,06 lod 4.9 11
Champenoux_2015_nP_A4 Qrob_Chr02 2 s_1BN4CB_644 v_508_128 23,76 23,06 24,51 lod 2.8 6.2
Champenoux_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 25,35 24,63 26,18 lod 4.0 8.7
Champenoux_2015_nSecLBD_A4 Qrob_Chr02 2 s_1AN4ZM_1665 v_8587_238 18,52 18,89 18,27 lod 3.2 7.4

0 Targeting