Protein : Qrob_P0087990.2 Q. robur
Protein Identifier  ? Qrob_P0087990.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=10) PTHR12565//PTHR12565:SF70 - STEROL REGULATORY ELEMENT-BINDING PROTEIN // SUBFAMILY NOT NAMED (PTHR12565:SF70) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 521  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003700 sequence-specific DNA binding transcription factor activity Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pper:PRUPE_ppa003350mg 1 519 + 519 Gaps:95 99.83 583 67.01 0.0 hypothetical protein
blastp_kegg lcl|pmum:103342808 1 519 + 519 Gaps:92 99.83 580 67.53 0.0 transcription factor bHLH62
blastp_kegg lcl|tcc:TCM_002737 1 519 + 519 Gaps:69 99.83 579 63.49 0.0 Basic helix-loop-helix DNA-binding superfamily protein putative
blastp_kegg lcl|pvu:PHAVU_008G133600g 1 514 + 514 Gaps:65 99.82 570 63.27 0.0 hypothetical protein
blastp_kegg lcl|cit:102615527 1 519 + 519 Gaps:73 99.82 553 66.30 0.0 transcription factor bHLH78-like
blastp_kegg lcl|pop:POPTR_0002s24990g 1 519 + 519 Gaps:65 99.82 563 64.23 0.0 POPTRDRAFT_553223 basic helix-loop-helix family protein
blastp_kegg lcl|fve:101298092 1 519 + 519 Gaps:92 99.82 544 65.38 0.0 transcription factor bHLH62-like
blastp_kegg lcl|gmx:100812081 1 514 + 514 Gaps:77 99.83 586 60.17 0.0 transcription factor bHLH78-like
blastp_kegg lcl|mdm:103435892 1 519 + 519 Gaps:86 99.82 568 64.55 0.0 transcription factor bHLH62-like
blastp_kegg lcl|pxb:103961385 1 519 + 519 Gaps:81 99.82 569 63.03 0.0 transcription factor bHLH62
blastp_uniprot_sprot sp|Q9SRT2|BH062_ARATH 1 519 + 519 Gaps:104 99.78 456 54.95 4e-122 Transcription factor bHLH62 OS Arabidopsis thaliana GN BHLH62 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FJL4|BH078_ARATH 1 519 + 519 Gaps:98 99.80 498 50.30 9e-101 Transcription factor bHLH78 OS Arabidopsis thaliana GN BHLH78 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK48|BH077_ARATH 204 493 + 290 Gaps:45 70.89 371 52.85 2e-60 Transcription factor bHLH77 OS Arabidopsis thaliana GN BHLH77 PE 2 SV 1
blastp_uniprot_sprot sp|Q9CAA9|BH049_ARATH 137 493 + 357 Gaps:57 69.96 486 44.41 7e-55 Transcription factor bHLH49 OS Arabidopsis thaliana GN BHLH49 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C670|BH076_ARATH 132 415 + 284 Gaps:59 64.36 390 49.00 6e-50 Transcription factor bHLH76 OS Arabidopsis thaliana GN BHLH76 PE 2 SV 1
blastp_uniprot_sprot sp|Q6NKN9|BH074_ARATH 279 407 + 129 Gaps:3 36.07 366 62.88 2e-45 Transcription factor bHLH74 OS Arabidopsis thaliana GN BHLH74 PE 2 SV 1
blastp_uniprot_sprot sp|Q8GY61|BH063_ARATH 279 402 + 124 Gaps:14 32.84 335 74.55 1e-44 Transcription factor bHLH63 OS Arabidopsis thaliana GN BHLH63 PE 2 SV 1
blastp_uniprot_sprot sp|Q0JXE7|BPE_ARATH 289 427 + 139 Gaps:9 37.90 343 63.85 8e-44 Transcription factor BPE OS Arabidopsis thaliana GN BPE PE 2 SV 1
blastp_uniprot_sprot sp|Q9LV17|BH079_ARATH 265 388 + 124 Gaps:3 45.20 281 61.42 2e-43 Transcription factor bHLH79 OS Arabidopsis thaliana GN BHLH79 PE 2 SV 1
blastp_uniprot_sprot sp|Q93W88|BH137_ARATH 223 386 + 164 Gaps:5 55.59 286 56.60 1e-42 Transcription factor bHLH137 OS Arabidopsis thaliana GN BHLH137 PE 2 SV 1
rpsblast_cdd gnl|CDD|197674 328 377 + 50 Gaps:2 98.11 53 36.54 1e-08 smart00353 HLH helix loop helix domain.

10 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 320 391 72 SSF47459 none none IPR011598
Gene3D 322 392 71 G3DSA:4.10.280.10 none none IPR011598
Coils 369 390 22 Coil none none none
ProSiteProfiles 322 372 51 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
PANTHER 289 519 231 PTHR12565 none none none
SMART 328 378 51 SM00353 none helix loop helix domain IPR011598
Pfam 326 373 48 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
PANTHER 47 268 222 PTHR12565 none none none
PANTHER 47 268 222 PTHR12565:SF70 none none IPR031064
PANTHER 289 519 231 PTHR12565:SF70 none none IPR031064

0 Localization

1 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_A4 Qrob_Chr07 7 s_1DP9TW_798 v_8128_173 22,61 22,14 22,73 lod 3.1 8.5

0 Targeting