Protein : Qrob_P0087770.2 Q. robur
Protein Identifier  ? Qrob_P0087770.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K10848 - DNA excision repair protein ERCC-4 [EC:3.1.-.-] Gene Prediction Quality  validated
Protein length 

Sequence

Length: 964  
Kegg Orthology  K10848
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0004518 nuclease activity Catalysis of the hydrolysis of ester linkages within nucleic acids.
GO:0006259 DNA metabolic process Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.

34 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101210951 1 963 + 963 Gaps:62 100.00 1003 74.88 0.0 DNA repair endonuclease UVH1-like
blastp_kegg lcl|cmo:103503479 1 963 + 963 Gaps:77 100.00 1020 73.33 0.0 DNA repair endonuclease UVH1
blastp_kegg lcl|gmx:100812359 1 963 + 963 Gaps:30 100.00 987 74.57 0.0 DNA repair endonuclease UVH1-like
blastp_kegg lcl|cam:101490549 1 963 + 963 Gaps:29 99.90 985 76.12 0.0 DNA repair endonuclease UVH1-like
blastp_kegg lcl|pxb:103937904 1 963 + 963 Gaps:93 100.00 1044 71.74 0.0 DNA repair endonuclease UVH1
blastp_kegg lcl|mtr:MTR_5g013480 1 963 + 963 Gaps:24 99.90 984 74.97 0.0 DNA repair endonuclease UVH1
blastp_kegg lcl|cit:102624221 1 963 + 963 Gaps:28 99.90 982 75.84 0.0 DNA repair endonuclease UVH1-like
blastp_kegg lcl|pmum:103342609 1 963 + 963 Gaps:84 100.00 1039 73.72 0.0 DNA repair endonuclease UVH1
blastp_kegg lcl|pper:PRUPE_ppa000673mg 1 963 + 963 Gaps:84 100.00 1039 73.72 0.0 hypothetical protein
blastp_kegg lcl|vvi:100247853 1 963 + 963 Gaps:27 100.00 964 76.24 0.0 DNA repair endonuclease UVH1-like
blastp_pdb 1j25_A 727 879 + 153 Gaps:12 100.00 143 33.57 2e-11 mol:protein length:143 ATP-dependent RNA helicase putative
blastp_pdb 1j24_A 727 879 + 153 Gaps:12 100.00 143 33.57 2e-11 mol:protein length:143 ATP-dependent RNA helicase putative
blastp_pdb 1j23_A 727 879 + 153 Gaps:12 100.00 143 33.57 2e-11 mol:protein length:143 ATP-dependent RNA helicase putative
blastp_pdb 1j22_A 727 879 + 153 Gaps:12 100.00 143 33.57 2e-11 mol:protein length:143 ATP-dependent RNA helicase putative
blastp_pdb 2bhn_D 732 809 + 78 none 36.45 214 38.46 8e-10 mol:protein length:214 XPF ENDONUCLEASE
blastp_pdb 2bhn_C 732 809 + 78 none 36.45 214 38.46 8e-10 mol:protein length:214 XPF ENDONUCLEASE
blastp_pdb 2bhn_B 732 809 + 78 none 36.45 214 38.46 8e-10 mol:protein length:214 XPF ENDONUCLEASE
blastp_pdb 2bhn_A 732 809 + 78 none 36.45 214 38.46 8e-10 mol:protein length:214 XPF ENDONUCLEASE
blastp_pdb 2bgw_B 732 809 + 78 none 35.62 219 38.46 9e-10 mol:protein length:219 XPF ENDONUCLEASE
blastp_pdb 2bgw_A 732 809 + 78 none 35.62 219 38.46 9e-10 mol:protein length:219 XPF ENDONUCLEASE
blastp_uniprot_sprot sp|Q9LKI5|XPF_ARATH 2 963 + 962 Gaps:24 99.79 956 70.02 0.0 DNA repair endonuclease UVH1 OS Arabidopsis thaliana GN UVH1 PE 1 SV 2
blastp_uniprot_sprot sp|Q9QZD4|XPF_MOUSE 1 963 + 963 Gaps:87 97.71 917 38.39 1e-178 DNA repair endonuclease XPF OS Mus musculus GN Ercc4 PE 2 SV 3
blastp_uniprot_sprot sp|P36617|RAD16_SCHPO 2 955 + 954 Gaps:143 98.18 877 36.70 7e-144 DNA repair protein rad16 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rad16 PE 1 SV 2
blastp_uniprot_sprot sp|P06777|RAD1_YEAST 83 955 + 873 Gaps:137 78.00 1100 33.45 3e-98 DNA repair protein RAD1 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RAD1 PE 1 SV 1
blastp_uniprot_sprot sp|Q92889|XPF_HUMAN 1 959 + 959 Gaps:57 87.01 916 40.65 1e-82 DNA repair endonuclease XPF OS Homo sapiens GN ERCC4 PE 1 SV 3
blastp_uniprot_sprot sp|Q9QYM7|XPF_CRIGR 1 959 + 959 Gaps:56 86.86 913 40.23 2e-82 DNA repair endonuclease XPF OS Cricetulus griseus GN ERCC4 PE 2 SV 3
blastp_uniprot_sprot sp|Q24087|XPF_DROME 1 959 + 959 Gaps:86 78.67 961 37.04 9e-67 DNA repair endonuclease XPF OS Drosophila melanogaster GN mei-9 PE 1 SV 2
blastp_uniprot_sprot sp|Q54PN5|XPF_DICDI 2 462 + 461 Gaps:56 47.20 964 30.11 9e-51 DNA repair endonuclease XPF OS Dictyostelium discoideum GN ercc4 PE 3 SV 1
rpsblast_cdd gnl|CDD|161947 83 955 + 873 Gaps:109 99.26 814 41.21 0.0 TIGR00596 rad1 DNA repair protein (rad1). All proteins in this family for which functions are known are components in a multiprotein endonuclease complex (usually made up of Rad1 and Rad10 homologs). This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologs of these genes but the function of these Archaeal genes is not known so we have set our cutoff to only pick up the eukaryotic genes.This family is based on the phylogenomic analysis of JA Eisen (1999 Ph.D. Thesis Stanford Universit.
rpsblast_cdd gnl|CDD|32131 722 959 + 238 Gaps:20 86.61 254 33.64 2e-32 COG1948 MUS81 ERCC4-type nuclease [DNA replication recombination and repair].

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 894 958 65 SSF47781 "Reactome:REACT_216" none IPR010994
Coils 384 412 29 Coil none none none
SMART 732 812 81 SM00891 none ERCC4 domain IPR006166
Pfam 735 865 131 PF02732 none ERCC4 domain IPR006166
Gene3D 729 878 150 G3DSA:3.40.50.10130 none none IPR020819
SUPERFAMILY 729 867 139 SSF52980 none none IPR011335
PANTHER 366 963 598 PTHR10150 none none none
PANTHER 1 341 341 PTHR10150 none none none

0 Localization

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting