Protein : Qrob_P0087720.2 Q. robur
Protein Identifier  ? Qrob_P0087720.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=2) PTHR11785//PTHR11785:SF275 - AMINO ACID TRANSPORTER // SUBFAMILY NOT NAMED Gene Prediction Quality  validated
Protein length 

Sequence

Length: 584  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0003333 amino acid transmembrane transport The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore.
GO:0015171 amino acid transmembrane transporter activity Enables the transfer of amino acids from one side of a membrane to the other. Amino acids are organic molecules that contain an amino group and a carboxyl group.

44 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_015845 5 580 + 576 Gaps:5 95.69 603 77.12 0.0 Cationic amino acid transporter putative
blastp_kegg lcl|fve:101309639 18 583 + 566 Gaps:2 97.08 583 78.09 0.0 cationic amino acid transporter 6 chloroplastic-like
blastp_kegg lcl|pxb:103937903 1 583 + 583 Gaps:20 100.00 601 73.88 0.0 cationic amino acid transporter 6 chloroplastic-like
blastp_kegg lcl|pper:PRUPE_ppa015187mg 11 583 + 573 Gaps:6 99.48 580 78.16 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s08200g 9 583 + 575 Gaps:4 100.00 573 76.09 0.0 hypothetical protein
blastp_kegg lcl|mdm:103436964 1 583 + 583 Gaps:20 100.00 601 74.38 0.0 cationic amino acid transporter 6 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_0121530 11 583 + 573 Gaps:3 97.95 584 75.00 0.0 cationic amino acid transporter putative
blastp_kegg lcl|mdm:103440562 9 583 + 575 Gaps:12 100.00 583 75.47 0.0 cationic amino acid transporter 6 chloroplastic-like
blastp_kegg lcl|cic:CICLE_v10019477mg 7 583 + 577 Gaps:3 99.65 576 77.00 0.0 hypothetical protein
blastp_kegg lcl|cit:102614253 7 583 + 577 Gaps:3 99.65 576 77.18 0.0 cationic amino acid transporter 6 chloroplastic-like
blastp_pdb 3gia_A 61 384 + 324 Gaps:22 69.82 444 25.81 7e-15 mol:protein length:444 Uncharacterized protein MJ0609
blastp_pdb 3gi9_C 61 384 + 324 Gaps:22 69.82 444 25.81 7e-15 mol:protein length:444 Uncharacterized protein MJ0609
blastp_pdb 3gi8_C 61 384 + 324 Gaps:22 69.82 444 25.81 1e-14 mol:protein length:444 Uncharacterized protein MJ0609
blastp_pdb 3ncy_D 75 401 + 327 Gaps:29 70.11 445 27.88 1e-13 mol:protein length:445 AdiC
blastp_pdb 3ncy_C 75 401 + 327 Gaps:29 70.11 445 27.88 1e-13 mol:protein length:445 AdiC
blastp_pdb 3ncy_B 75 401 + 327 Gaps:29 70.11 445 27.88 1e-13 mol:protein length:445 AdiC
blastp_pdb 3ncy_A 75 401 + 327 Gaps:29 70.11 445 27.88 1e-13 mol:protein length:445 AdiC
blastp_pdb 3l1l_A 75 401 + 327 Gaps:29 70.11 445 27.24 4e-13 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_D 75 401 + 327 Gaps:29 70.11 445 27.24 4e-13 mol:protein length:445 Arginine/agmatine antiporter
blastp_pdb 3lrc_C 75 401 + 327 Gaps:29 70.11 445 27.24 4e-13 mol:protein length:445 Arginine/agmatine antiporter
blastp_uniprot_sprot sp|Q9LZ20|CAAT6_ARATH 24 566 + 543 Gaps:14 94.85 583 50.81 0.0 Cationic amino acid transporter 6 chloroplastic OS Arabidopsis thaliana GN CAT6 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SQZ0|CAAT7_ARATH 24 558 + 535 Gaps:13 93.15 584 49.63 0.0 Cationic amino acid transporter 7 chloroplastic OS Arabidopsis thaliana GN CAT7 PE 3 SV 1
blastp_uniprot_sprot sp|Q84MA5|CAAT1_ARATH 21 562 + 542 Gaps:19 91.08 594 39.74 1e-143 Cationic amino acid transporter 1 OS Arabidopsis thaliana GN CAT1 PE 1 SV 1
blastp_uniprot_sprot sp|O64759|CAAT5_ARATH 23 562 + 540 Gaps:29 94.73 569 38.22 4e-129 Cationic amino acid transporter 5 OS Arabidopsis thaliana GN CAT5 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SHH0|CAAT8_ARATH 22 556 + 535 Gaps:8 90.34 590 41.09 5e-127 Cationic amino acid transporter 8 vacuolar OS Arabidopsis thaliana GN CAT8 PE 1 SV 1
blastp_uniprot_sprot sp|Q8W4K3|CAAT4_ARATH 47 448 + 402 Gaps:11 66.50 600 34.59 1e-70 Cationic amino acid transporter 4 vacuolar OS Arabidopsis thaliana GN CAT4 PE 1 SV 1
blastp_uniprot_sprot sp|Q9ASS7|CAAT2_ARATH 54 446 + 393 Gaps:10 62.20 635 35.70 5e-68 Cationic amino acid transporter 2 vacuolar OS Arabidopsis thaliana GN CAT2 PE 1 SV 1
blastp_uniprot_sprot sp|Q8GYB4|CAAT3_ARATH 35 447 + 413 Gaps:14 67.49 609 34.55 9e-68 Cationic amino acid transporter 3 mitochondrial OS Arabidopsis thaliana GN CAT3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9C5D6|CAAT9_ARATH 35 560 + 526 Gaps:24 93.15 569 31.89 6e-66 Cationic amino acid transporter 9 chloroplastic OS Arabidopsis thaliana GN CAT9 PE 2 SV 1
blastp_uniprot_sprot sp|Q797A7|YFNA_BACSU 36 438 + 403 Gaps:17 85.03 461 35.20 9e-66 Uncharacterized amino acid permease YfnA OS Bacillus subtilis (strain 168) GN yfnA PE 3 SV 1

35 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 437 447 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 365 392 28 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 322 340 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 526 530 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 418 436 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 413 417 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 213 218 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 493 562 70 PTHR11785:SF275 none none none
PANTHER 20 447 428 PTHR11785:SF275 none none none
Phobius 469 473 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 69 91 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Pfam 504 552 49 PF13906 none C-terminus of AA_permease IPR029485
Phobius 552 583 32 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 284 294 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 64 485 422 PF13520 none Amino acid permease IPR002293
Phobius 341 364 24 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 295 321 27 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 531 551 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 242 260 19 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 1 68 68 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 152 193 42 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 120 130 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 261 283 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 194 212 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 20 447 428 PTHR11785 none none IPR002293
Phobius 131 151 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 506 525 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 393 412 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 493 562 70 PTHR11785 none none IPR002293
Phobius 92 96 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none

12 Localization

Analysis Start End Length
TMHMM 298 320 22
TMHMM 414 436 22
TMHMM 195 212 17
TMHMM 475 497 22
TMHMM 95 117 22
TMHMM 69 91 22
TMHMM 504 526 22
TMHMM 219 241 22
TMHMM 531 553 22
TMHMM 449 471 22
TMHMM 130 152 22
TMHMM 341 363 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting