Protein : Qrob_P0087420.2 Q. robur
Protein Identifier  ? Qrob_P0087420.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=45) PF00892 - EamA-like transporter family Gene Prediction Quality  validated
Protein length 

Sequence

Length: 392  
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0 Synonyms

3 GO Terms

Identifier Name Description
GO:0016020 membrane A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
GO:0022857 transmembrane transporter activity Enables the transfer of a substance from one side of a membrane to the other.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|fve:101312193 1 391 + 391 Gaps:12 99.50 401 73.68 0.0 auxin-induced protein 5NG4-like
blastp_kegg lcl|pop:POPTR_0001s06980g 5 390 + 386 Gaps:13 98.03 407 76.19 0.0 POPTRDRAFT_1065707 hypothetical protein
blastp_kegg lcl|pper:PRUPE_ppa006848mg 5 386 + 382 Gaps:17 96.95 393 76.64 0.0 hypothetical protein
blastp_kegg lcl|pop:POPTR_0003s19170g 5 383 + 379 Gaps:5 94.58 406 77.08 0.0 POPTRDRAFT_415263 hypothetical protein
blastp_kegg lcl|vvi:100266045 7 390 + 384 Gaps:11 97.52 403 73.54 0.0 auxin-induced protein 5NG4-like
blastp_kegg lcl|cic:CICLE_v10001335mg 1 390 + 390 Gaps:13 98.53 409 72.95 0.0 hypothetical protein
blastp_kegg lcl|cit:102620980 1 390 + 390 Gaps:13 98.53 409 72.95 0.0 WAT1-related protein At5g07050-like
blastp_kegg lcl|mdm:103438581 1 383 + 383 Gaps:14 96.68 392 74.41 0.0 WAT1-related protein At5g07050-like
blastp_kegg lcl|rcu:RCOM_0621350 5 390 + 386 Gaps:20 97.83 415 71.67 0.0 Auxin-induced protein 5NG4 putative
blastp_kegg lcl|pxb:103952111 1 383 + 383 Gaps:15 95.96 396 73.68 0.0 WAT1-related protein At5g07050-like
blastp_uniprot_sprot sp|Q9FL41|WTR38_ARATH 1 390 + 390 Gaps:19 98.26 402 64.81 1e-180 WAT1-related protein At5g07050 OS Arabidopsis thaliana GN At5g07050 PE 2 SV 1
blastp_uniprot_sprot sp|F4IJ08|WTR15_ARATH 9 373 + 365 Gaps:11 92.39 394 53.30 4e-138 WAT1-related protein At2g40900 OS Arabidopsis thaliana GN At2g40900 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXX8|WTR27_ARATH 6 329 + 324 Gaps:5 84.62 377 54.86 1e-123 WAT1-related protein At3g56620 OS Arabidopsis thaliana GN At3g56620 PE 2 SV 1
blastp_uniprot_sprot sp|F4HZQ7|WTR5_ARATH 7 331 + 325 Gaps:10 85.60 389 50.75 3e-118 WAT1-related protein At1g21890 OS Arabidopsis thaliana GN At1g21890 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LPF1|WTR8_ARATH 8 351 + 344 Gaps:18 94.59 370 46.57 2e-110 WAT1-related protein At1g44800 OS Arabidopsis thaliana GN At1g44800 PE 1 SV 1
blastp_uniprot_sprot sp|O80638|WTR14_ARATH 8 331 + 324 Gaps:10 86.63 374 50.31 2e-110 WAT1-related protein At2g39510 OS Arabidopsis thaliana GN At2g39510 PE 2 SV 1
blastp_uniprot_sprot sp|Q501F8|WTR32_ARATH 12 357 + 346 Gaps:9 94.64 373 45.89 3e-109 WAT1-related protein At4g08300 OS Arabidopsis thaliana GN At4g08300 PE 2 SV 1
blastp_uniprot_sprot sp|Q9ZUS1|WTR13_ARATH 1 387 + 387 Gaps:35 97.89 380 46.24 1e-107 WAT1-related protein At2g37460 OS Arabidopsis thaliana GN At2g37460 PE 2 SV 1
blastp_uniprot_sprot sp|Q9SUF1|WTR31_ARATH 1 358 + 358 Gaps:15 95.57 384 42.51 5e-103 WAT1-related protein At4g08290 OS Arabidopsis thaliana GN At4g08290 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FNA5|WTR39_ARATH 9 331 + 323 Gaps:20 86.21 377 45.54 6e-94 WAT1-related protein At5g13670 OS Arabidopsis thaliana GN At5g13670 PE 2 SV 1
rpsblast_cdd gnl|CDD|177805 16 331 + 316 Gaps:13 88.55 358 32.49 2e-43 PLN00411 PLN00411 nodulin MtN21 family protein Provisional.
rpsblast_cdd gnl|CDD|144477 22 326 + 305 Gaps:13 100.00 126 41.27 9e-08 pfam00892 EamA EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6.
rpsblast_cdd gnl|CDD|31041 14 331 + 318 Gaps:34 97.26 292 18.31 1e-07 COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].

27 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 327 391 65 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 108 126 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 205 215 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 282 301 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 75 96 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 184 204 21 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 253 270 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 127 137 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 42 63 22 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 216 238 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
PANTHER 1 370 370 PTHR31218:SF9 none none none
Phobius 138 156 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 302 306 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 239 252 14 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 97 107 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
PANTHER 1 370 370 PTHR31218 none none IPR030184
Phobius 157 183 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 47 156 110 SSF103481 none none none
SUPERFAMILY 232 330 99 SSF103481 none none none
Phobius 64 74 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 271 281 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 31 41 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Pfam 196 325 130 PF00892 none EamA-like transporter family IPR000620
Pfam 24 154 131 PF00892 none EamA-like transporter family IPR000620
Phobius 1 11 11 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 12 30 19 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 307 326 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none

10 Localization

Analysis Start End Length
TMHMM 45 63 18
TMHMM 140 162 22
TMHMM 185 204 19
TMHMM 280 302 22
TMHMM 102 124 22
TMHMM 13 30 17
TMHMM 253 275 22
TMHMM 307 326 19
TMHMM 217 238 21
TMHMM 75 97 22

7 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

0 Targeting