Protein : Qrob_P0086990.2 Q. robur
Protein Identifier  ? Qrob_P0086990.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=4) PTHR20856:SF5 - DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 173  
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

14 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|csv:101214176 36 160 + 125 Gaps:9 9.89 1173 65.52 1e-42 POLR1B polymerase (RNA) I polypeptide B 128kDa
blastp_kegg lcl|cmo:103488429 36 160 + 125 Gaps:9 9.89 1173 65.52 1e-42 DNA-directed RNA polymerase I subunit RPA2
blastp_kegg lcl|cit:102611701 37 160 + 124 Gaps:11 9.96 1175 65.81 7e-41 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|sot:102579628 21 160 + 140 Gaps:10 11.03 1179 56.15 3e-39 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|gmx:100812761 28 160 + 133 Gaps:12 10.30 1175 58.68 9e-39 DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|gmx:100814083 37 160 + 124 Gaps:9 9.79 1175 59.13 2e-38 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|sly:101261746 18 160 + 143 Gaps:13 11.66 1184 52.90 4e-38 POLR1B polymerase (RNA) I polypeptide B 128kDa
blastp_kegg lcl|pvu:PHAVU_011G201300g 28 160 + 133 Gaps:12 10.25 1180 57.02 3e-36 hypothetical protein
blastp_kegg lcl|cam:101496788 37 160 + 124 Gaps:9 9.77 1177 56.52 2e-34 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|brp:103828917 32 158 + 127 Gaps:14 10.72 1166 53.60 8e-34 probable DNA-directed RNA polymerase I subunit RPA2
blastp_uniprot_sprot sp|Q5REE8|RPA2_PONAB 32 160 + 129 Gaps:13 10.39 1136 27.97 8e-06 DNA-directed RNA polymerase I subunit RPA2 OS Pongo abelii GN POLR1B PE 2 SV 1
rpsblast_cdd gnl|CDD|73223 44 162 + 119 Gaps:14 12.36 866 29.91 4e-12 cd00653 RNA_pol_B_RPB2 RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation..
rpsblast_cdd gnl|CDD|30434 40 159 + 120 Gaps:25 9.34 1060 23.23 1e-07 COG0085 RpoB DNA-directed RNA polymerase beta subunit/140 kD subunit [Transcription].
rpsblast_kog gnl|CDD|35437 41 160 + 120 Gaps:13 9.99 1111 27.93 1e-12 KOG0216 KOG0216 KOG0216 RNA polymerase I second largest subunit [Transcription].

5 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 40 160 121 SSF64484 none none none
PANTHER 10 159 150 PTHR20856:SF5 none none none
Gene3D 41 159 119 G3DSA:3.90.1100.10 none none none
Pfam 43 165 123 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
PANTHER 10 159 150 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting