Protein : Qrob_P0086980.2 Q. robur
Protein Identifier  ? Qrob_P0086980.2 Organism . Name  Quercus robur
Score  3.0 Score Type  egn
Protein Description  (M=2) K03002 - DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 637  
Kegg Orthology  K03002
Paste the following link
Lists
This Protein isn't in any lists. Upload a list.

Sequence Feature Displayer

Protein Sequence Displayer

J Browse Displayer

0 Synonyms

5 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100241130 46 621 + 576 Gaps:56 53.24 1142 79.28 0.0 POLR1B polymerase (RNA) I polypeptide B 128kDa
blastp_kegg lcl|cmo:103488429 46 621 + 576 Gaps:55 51.92 1173 76.19 0.0 DNA-directed RNA polymerase I subunit RPA2
blastp_kegg lcl|csv:101214176 46 621 + 576 Gaps:55 51.92 1173 75.70 0.0 POLR1B polymerase (RNA) I polypeptide B 128kDa
blastp_kegg lcl|tcc:TCM_044784 46 621 + 576 Gaps:55 56.70 1074 75.04 0.0 DNA-directed RNA polymerase isoform 1
blastp_kegg lcl|gmx:100812761 46 621 + 576 Gaps:55 51.83 1175 75.86 0.0 DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|cic:CICLE_v10024768mg 46 621 + 576 Gaps:55 56.28 1082 74.71 0.0 hypothetical protein
blastp_kegg lcl|cit:102611701 46 621 + 576 Gaps:55 51.83 1175 74.71 0.0 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|rcu:RCOM_1264750 46 621 + 576 Gaps:62 52.98 1159 73.94 0.0 DNA-directed RNA polymerase I subunit putative
blastp_kegg lcl|gmx:100814083 46 621 + 576 Gaps:55 51.83 1175 74.71 0.0 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|pvu:PHAVU_011G201300g 46 621 + 576 Gaps:55 51.61 1180 74.88 0.0 hypothetical protein
blastp_pdb 2y0s_R 60 635 + 576 Gaps:115 50.13 1131 24.87 6e-18 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2y0s_B 60 635 + 576 Gaps:115 50.13 1131 24.87 6e-18 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE
blastp_pdb 2wb1_R 60 635 + 576 Gaps:115 50.13 1131 24.87 6e-18 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 2wb1_B 60 635 + 576 Gaps:115 50.13 1131 24.87 6e-18 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 2waq_B 60 635 + 576 Gaps:115 50.13 1131 24.87 6e-18 mol:protein length:1131 DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
blastp_pdb 3hkz_J 60 635 + 576 Gaps:119 50.44 1124 24.16 3e-16 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 3hkz_B 60 635 + 576 Gaps:119 50.44 1124 24.16 3e-16 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2pmz_R 60 635 + 576 Gaps:119 50.44 1124 24.16 3e-16 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 2pmz_B 60 635 + 576 Gaps:119 50.44 1124 24.16 3e-16 mol:protein length:1124 DNA-directed RNA polymerase subunit B
blastp_pdb 4a93_B 563 614 + 52 none 4.25 1224 51.92 1e-08 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|Q9P7X8|RPA2_SCHPO 32 631 + 600 Gaps:107 52.90 1174 40.58 2e-135 Probable DNA-directed RNA polymerase I subunit RPA2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpa2 PE 3 SV 2
blastp_uniprot_sprot sp|Q75DS1|RPA2_ASHGO 46 621 + 576 Gaps:92 48.49 1196 42.41 5e-130 DNA-directed RNA polymerase I subunit RPA2 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPA2 PE 3 SV 2
blastp_uniprot_sprot sp|O74633|RPA2_NEUCR 46 621 + 576 Gaps:96 47.81 1234 40.85 7e-129 DNA-directed RNA polymerase I subunit RPA2 OS Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN acr-2 PE 1 SV 2
blastp_uniprot_sprot sp|P22138|RPA2_YEAST 46 621 + 576 Gaps:73 48.30 1203 41.82 9e-129 DNA-directed RNA polymerase I subunit RPA135 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPA135 PE 1 SV 1
blastp_uniprot_sprot sp|Q54BM1|RPA2_DICDI 46 634 + 589 Gaps:97 52.92 1130 42.14 4e-127 DNA-directed RNA polymerase I subunit rpa2 OS Dictyostelium discoideum GN polr1b PE 3 SV 1
blastp_uniprot_sprot sp|P70700|RPA2_MOUSE 33 625 + 593 Gaps:111 53.04 1135 41.86 1e-124 DNA-directed RNA polymerase I subunit RPA2 OS Mus musculus GN Polr1b PE 2 SV 2
blastp_uniprot_sprot sp|Q9H9Y6|RPA2_HUMAN 19 625 + 607 Gaps:89 54.27 1135 39.77 5e-123 DNA-directed RNA polymerase I subunit RPA2 OS Homo sapiens GN POLR1B PE 1 SV 2
blastp_uniprot_sprot sp|Q5REE8|RPA2_PONAB 33 625 + 593 Gaps:89 52.99 1136 40.53 2e-122 DNA-directed RNA polymerase I subunit RPA2 OS Pongo abelii GN POLR1B PE 2 SV 1
blastp_uniprot_sprot sp|P20028|RPA2_DROME 32 621 + 590 Gaps:112 52.97 1129 38.13 6e-110 DNA-directed RNA polymerase I subunit RPA2 OS Drosophila melanogaster GN RpI135 PE 2 SV 2
blastp_uniprot_sprot sp|O54888|RPA2_RAT 19 625 + 607 Gaps:147 54.27 1135 39.61 1e-104 DNA-directed RNA polymerase I subunit RPA2 OS Rattus norvegicus GN Polr1b PE 1 SV 1

13 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Coils 264 285 22 Coil none none none
Pfam 461 518 58 PF06883 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6" RNA polymerase I, Rpa2 specific domain IPR009674
PANTHER 298 622 325 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
Pfam 344 408 65 PF04565 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 3 IPR007645
PANTHER 298 622 325 PTHR20856:SF5 none none none
PANTHER 46 280 235 PTHR20856:SF5 none none none
Gene3D 571 604 34 G3DSA:3.90.1100.10 none none none
Gene3D 71 90 20 G3DSA:3.90.1100.10 none none none
Gene3D 235 418 184 G3DSA:3.90.1100.10 none none none
Pfam 46 282 237 PF04563 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase beta subunit IPR007644
Pfam 574 621 48 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
PANTHER 46 280 235 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
SUPERFAMILY 46 622 577 SSF64484 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting