Protein : Qrob_P0086960.2 Q. robur
Protein Identifier  ? Qrob_P0086960.2 Organism . Name  Quercus robur
Score  0.0 Score Type  egn
Protein Description  (M=2) K03002 - DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Code Enzyme  EC:2.7.7.6
Gene Prediction Quality  validated Protein length 

Sequence

Length: 319  
Kegg Orthology  K03002
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0006351 transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
GO:0003899 DNA-directed RNA polymerase activity Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO:0032549 ribonucleoside binding Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose.

43 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|mdm:103428976 6 316 + 311 Gaps:26 41.21 711 85.32 1e-177 DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|cic:CICLE_v10024768mg 8 318 + 311 Gaps:15 27.36 1082 85.47 2e-175 hypothetical protein
blastp_kegg lcl|cit:102611701 8 318 + 311 Gaps:15 25.19 1175 85.47 2e-174 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|gmx:100812761 7 318 + 312 Gaps:16 25.19 1175 85.14 3e-174 DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|fve:101299706 7 318 + 312 Gaps:16 25.32 1169 84.80 5e-174 DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|vvi:100241130 8 318 + 311 Gaps:16 25.83 1142 84.41 2e-173 POLR1B polymerase (RNA) I polypeptide B 128kDa
blastp_kegg lcl|gmx:100814083 7 318 + 312 Gaps:16 25.19 1175 84.46 1e-172 probable DNA-directed RNA polymerase I subunit RPA2-like
blastp_kegg lcl|rcu:RCOM_1264750 7 316 + 310 Gaps:15 25.45 1159 83.39 2e-172 DNA-directed RNA polymerase I subunit putative
blastp_kegg lcl|pxb:103946321 6 316 + 311 Gaps:26 24.85 1179 85.32 3e-172 DNA-directed RNA polymerase I subunit RPA2
blastp_kegg lcl|fve:101294852 7 318 + 312 Gaps:16 25.28 1171 84.12 1e-171 DNA-directed RNA polymerase I subunit RPA2-like
blastp_pdb 3h0g_N 12 314 + 303 Gaps:49 20.99 1210 46.06 1e-61 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_pdb 3h0g_B 12 314 + 303 Gaps:49 20.99 1210 46.06 1e-61 mol:protein length:1210 DNA-directed RNA polymerase II subunit RPB2
blastp_pdb 4a93_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3m_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3l_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3k_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3j_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3i_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3g_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_pdb 4a3f_B 12 306 + 295 Gaps:48 20.18 1224 46.56 1e-59 mol:protein length:1224 DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2
blastp_uniprot_sprot sp|Q9H9Y6|RPA2_HUMAN 7 312 + 306 Gaps:41 23.88 1135 60.15 3e-96 DNA-directed RNA polymerase I subunit RPA2 OS Homo sapiens GN POLR1B PE 1 SV 2
blastp_uniprot_sprot sp|O54888|RPA2_RAT 7 312 + 306 Gaps:41 23.88 1135 59.78 7e-96 DNA-directed RNA polymerase I subunit RPA2 OS Rattus norvegicus GN Polr1b PE 1 SV 1
blastp_uniprot_sprot sp|P70700|RPA2_MOUSE 7 312 + 306 Gaps:41 23.88 1135 59.41 5e-95 DNA-directed RNA polymerase I subunit RPA2 OS Mus musculus GN Polr1b PE 2 SV 2
blastp_uniprot_sprot sp|Q5REE8|RPA2_PONAB 7 312 + 306 Gaps:42 23.94 1136 59.93 2e-94 DNA-directed RNA polymerase I subunit RPA2 OS Pongo abelii GN POLR1B PE 2 SV 1
blastp_uniprot_sprot sp|Q54BM1|RPA2_DICDI 12 313 + 302 Gaps:40 23.19 1130 59.54 1e-93 DNA-directed RNA polymerase I subunit rpa2 OS Dictyostelium discoideum GN polr1b PE 3 SV 1
blastp_uniprot_sprot sp|P28365|RPA2_EUPOC 15 314 + 300 Gaps:43 24.27 1166 56.89 4e-91 DNA-directed RNA polymerase I subunit RPA2 OS Euplotes octocarinatus GN RPA2 PE 3 SV 2
blastp_uniprot_sprot sp|Q9P7X8|RPA2_SCHPO 8 312 + 305 Gaps:35 24.70 1174 51.72 2e-86 Probable DNA-directed RNA polymerase I subunit RPA2 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN rpa2 PE 3 SV 2
blastp_uniprot_sprot sp|Q75DS1|RPA2_ASHGO 12 308 + 297 Gaps:63 24.58 1196 51.70 8e-83 DNA-directed RNA polymerase I subunit RPA2 OS Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN RPA2 PE 3 SV 2
blastp_uniprot_sprot sp|P22138|RPA2_YEAST 7 308 + 302 Gaps:51 24.85 1203 51.84 1e-82 DNA-directed RNA polymerase I subunit RPA135 OS Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN RPA135 PE 1 SV 1
blastp_uniprot_sprot sp|P20028|RPA2_DROME 12 313 + 302 Gaps:34 23.74 1129 52.99 3e-82 DNA-directed RNA polymerase I subunit RPA2 OS Drosophila melanogaster GN RpI135 PE 2 SV 2

12 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Gene3D 13 177 165 G3DSA:2.40.270.10 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" none IPR007120
Pfam 201 311 111 PF04560 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 7 IPR007641
Pfam 9 199 191 PF00562 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerase Rpb2, domain 6 IPR007120
PANTHER 7 94 88 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 122 252 131 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
PANTHER 7 94 88 PTHR20856:SF5 none none none
PANTHER 122 252 131 PTHR20856:SF5 none none none
SUPERFAMILY 124 314 191 SSF64484 none none none
SUPERFAMILY 8 95 88 SSF64484 none none none
PANTHER 272 318 47 PTHR20856 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788";signature_desc=DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 none IPR015712
ProSitePatterns 23 35 13 PS01166 "KEGG:00230+2.7.7.6","KEGG:00240+2.7.7.6","Reactome:REACT_1788" RNA polymerases beta chain signature. IPR007121
PANTHER 272 318 47 PTHR20856:SF5 none none none

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_vSeqBC_3P Qrob_Chr10 10 s_1A6CK6_610 v_7092_29 4,28 0 23,27 lod 2,8619 7
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nFork*_3P Qrob_Chr06 6 v_12930_125 s_1AMZEI_909 34,28 7,43 41,48 lod 2,4044 5,5
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran2_2002_QTL10_peak_Bud_burst_A4 Qrob_Chr04 4 s_1B59MJ_737 s_1BGLSD_999 15,86 0 41,66 lod 2,8 4

0 Targeting