Protein : Qrob_P0086740.2 Q. robur
Protein Identifier  ? Qrob_P0086740.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=4) K02890 - large subunit ribosomal protein L22 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 199  
Kegg Orthology  K02890
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO:0015934 large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).

40 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pmum:18668071 77 198 + 122 none 86.52 141 69.67 2e-54 rpl22 CP95_p027 ribosomal protein L22
blastp_kegg lcl|rcu:RCOM_ORF00083 76 198 + 123 none 76.88 160 69.11 2e-53 rpl22 ribosomal protein L22
blastp_kegg lcl|pper:PrpeC_p061 77 198 + 122 none 86.52 141 68.85 6e-53 rpl22 ribosomal protein L22
blastp_kegg lcl|pop:Poptr_cp062 77 197 + 121 Gaps:1 90.91 132 71.67 6e-53 rpl22 ribosomal protein L22
blastp_kegg lcl|sot:4099883 88 198 + 111 none 71.61 155 73.87 1e-52 rpl22 SotuCp062 ribosomal protein L22
blastp_kegg lcl|ath:ArthCp062 77 198 + 122 none 76.25 160 66.39 2e-52 rpl22 ribosomal protein L22
blastp_kegg lcl|sly:3950468 88 198 + 111 none 71.61 155 72.97 7e-52 rpl22 LyesC2p030 ribosomal protein L22
blastp_kegg lcl|sly:101259659 88 198 + 111 none 71.61 155 72.97 7e-52 rpl22 ribosomal protein L22
blastp_kegg lcl|aly:ARALYDRAFT_315563 77 198 + 122 none 76.25 160 65.57 1e-51 ribosomal protein L22
blastp_kegg lcl|aly:ARALYDRAFT_315497 77 198 + 122 none 76.25 160 65.57 2e-51 ribosomal protein L22
blastp_pdb 3bbo_U 93 197 + 105 none 52.76 199 67.62 2e-43 mol:protein length:199 Ribosomal Protein L22
blastp_pdb 3pyv_S 88 195 + 108 none 96.43 112 44.44 2e-20 mol:protein length:112 50S ribosomal protein L22
blastp_pdb 3pyt_S 88 195 + 108 none 96.43 112 44.44 2e-20 mol:protein length:112 50S ribosomal protein L22
blastp_pdb 3pyr_S 88 195 + 108 none 96.43 112 44.44 2e-20 mol:protein length:112 50S ribosomal protein L22
blastp_pdb 3pyo_S 88 195 + 108 none 96.43 112 44.44 2e-20 mol:protein length:112 50S ribosomal protein L22
blastp_pdb 3ms1_S 88 195 + 108 none 96.43 112 44.44 2e-20 mol:protein length:112 50S ribosomal protein L22
blastp_pdb 3mrz_S 88 195 + 108 none 96.43 112 44.44 2e-20 mol:protein length:112 50S ribosomal protein L22
blastp_pdb 4dhc_W 88 195 + 108 none 95.58 113 44.44 2e-20 mol:protein length:113 50S Ribosomal Protein L22
blastp_pdb 4dha_W 88 195 + 108 none 95.58 113 44.44 2e-20 mol:protein length:113 50S Ribosomal Protein L22
blastp_pdb 4abs_W 88 195 + 108 none 95.58 113 44.44 2e-20 mol:protein length:113 50S RIBOSOMAL PROTEIN L22
blastp_uniprot_sprot sp|Q49KV9|RK22_EUCGG 79 198 + 120 none 75.00 160 70.00 7e-55 50S ribosomal protein L22 chloroplastic OS Eucalyptus globulus subsp. globulus GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|Q09G06|RK22_PLAOC 88 198 + 111 none 72.08 154 75.68 8e-55 50S ribosomal protein L22 chloroplastic OS Platanus occidentalis GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|A4GYV0|RK22_POPTR 77 197 + 121 Gaps:1 90.91 132 71.67 2e-54 50S ribosomal protein L22 chloroplastic OS Populus trichocarpa GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|A4QL58|RK22_DRANE 77 198 + 122 none 76.25 160 67.21 3e-54 50S ribosomal protein L22 chloroplastic OS Draba nemorosa GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|B1NWI9|RK22_MANES 76 198 + 123 Gaps:1 91.73 133 69.67 4e-54 50S ribosomal protein L22 chloroplastic OS Manihot esculenta GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|Q2VEE1|RK22_SOLTU 88 198 + 111 none 71.61 155 73.87 4e-54 50S ribosomal protein L22 chloroplastic OS Solanum tuberosum GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|A4QK57|RK22_ARAHI 77 198 + 122 none 76.25 160 66.39 4e-54 50S ribosomal protein L22 chloroplastic OS Arabis hirsuta GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|B1A974|RK22_CARPA 80 198 + 119 none 83.80 142 69.75 5e-54 50S ribosomal protein L22 chloroplastic OS Carica papaya GN rpl22 PE 3 SV 1
blastp_uniprot_sprot sp|P24283|RK22_PELHO 77 198 + 122 none 81.88 149 66.39 7e-54 50S ribosomal protein L22 chloroplastic OS Pelargonium hortorum GN rpl22-A PE 3 SV 2
blastp_uniprot_sprot sp|P56795|RK22_ARATH 77 198 + 122 none 76.25 160 66.39 7e-54 50S ribosomal protein L22 chloroplastic OS Arabidopsis thaliana GN rpl22 PE 3 SV 1

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 91 194 104 PF00237 none Ribosomal protein L22p/L17e IPR001063
SUPERFAMILY 81 195 115 SSF54843 none none IPR001063
Hamap 87 196 110 MF_01331_B none 50S ribosomal protein L22 [rplV]. IPR005727
Gene3D 88 196 109 G3DSA:3.90.470.10 none none IPR001063
TIGRFAM 93 192 100 TIGR01044 none rplV_bact: ribosomal protein uL22 IPR005727
PANTHER 87 195 109 PTHR13501 none none IPR005727

0 Localization

12 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran1_2003_QTL2_peak_Bud_burst_A4 Qrob_Chr02 2 s_1B0H8U_259 s_1CB1VL_554 17 0 87 lod 3,3 8,7
Bourran2_2004_QTL9_peak_Bud_burst_3P Qrob_Chr02 2 s_1C34E9_788 v_12238_322 50 25 75 lod 4,4 10,1
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf Qrob_Chr02 2 s_1AQA4Z_1644 s_1AK5QX_947 53.67 14,01 79,68 lod 5.6594 0.03
Bourran1_2004_QTL2_peak_Bud_burst_3P Qrob_Chr02 2 s_1AW12F_382 s_1A77MR_223 42 6 64 lod 3,6 9,6
Bourran_2000_2002_QTL2_Delta.F Qrob_Chr02 2 s_1CSO13_1244 s_1AVEUF_1540 55.44 46,71 63,68 lod 7.3232 0.058
Bourran2_2002_QTL7_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 29 52 lod 8,1 16
Bourran2_2002_QTL9_peak_Bud_burst_A4 Qrob_Chr02 2 s_1BFNDA_375 s_1A3VA1_2139 32,5 17 62 lod 3,1 4,2
Bourran2_2003_QTL8_peak_Bud_burst_3P Qrob_Chr02 2 s_1ANG6_1446 v_11270_161 40 0 72 lod 4,4 9,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2015_nP_A4 Qrob_Chr02 2 s_1A0FUE_1868 s_1A1UAI_500 20,64 20,47 21,36 lod 5.8 10.9
Bourran2_2015_nPriLBD_A4 Qrob_Chr02 2 s_1CP5DI_1183 s_1A63ZX_1277 24,87 24,63 26,18 lod 3.8 7
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL6_d13Cf Qrob_Chr02 2 s_1AEP21_172 v_6048_204 46.33 22,5 65,23 lod 4.972 0.03

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 66   Mitochondrion 4 0.052 0.604 NON-PLANT 66