Protein : Qrob_P0085910.2 Q. robur
Protein Identifier  ? Qrob_P0085910.2 Organism . Name  Quercus robur
Score  69.2 Score Type  egn
Protein Description  (M=2) PTHR11649:SF62 - PROTEIN SEY1 HOMOLOG (PTHR11649:SF62) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 795  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0005525 GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.

23 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|tcc:TCM_029059 1 794 + 794 Gaps:50 93.43 822 83.85 0.0 Root hair defective 3 GTP-binding protein (RHD3) isoform 1
blastp_kegg lcl|pmum:103327708 1 794 + 794 Gaps:45 94.44 810 83.40 0.0 protein ROOT HAIR DEFECTIVE 3-like
blastp_kegg lcl|pper:PRUPE_ppa001516mg 1 794 + 794 Gaps:45 94.44 810 83.14 0.0 hypothetical protein
blastp_kegg lcl|cit:102625846 1 794 + 794 Gaps:50 94.46 813 82.03 0.0 protein ROOT HAIR DEFECTIVE 3-like
blastp_kegg lcl|pxb:103933111 1 749 + 749 Gaps:36 90.00 810 84.09 0.0 protein ROOT HAIR DEFECTIVE 3-like
blastp_kegg lcl|pxb:103957172 1 749 + 749 Gaps:36 90.00 810 83.95 0.0 protein ROOT HAIR DEFECTIVE 3-like
blastp_kegg lcl|mdm:103453564 1 794 + 794 Gaps:45 94.44 810 82.48 0.0 protein ROOT HAIR DEFECTIVE 3
blastp_kegg lcl|rcu:RCOM_0312010 1 794 + 794 Gaps:50 94.46 813 81.77 0.0 Protein SEY1 putative
blastp_kegg lcl|gmx:100777656 1 794 + 794 Gaps:47 94.43 808 79.82 0.0 protein ROOT HAIR DEFECTIVE 3 homolog 1-like
blastp_kegg lcl|vvi:100254873 1 794 + 794 Gaps:50 88.17 871 81.12 0.0 protein ROOT HAIR DEFECTIVE 3 homolog 1-like
blastp_uniprot_sprot sp|P93042|RHD3_ARATH 1 767 + 767 Gaps:45 92.02 802 77.51 0.0 Protein ROOT HAIR DEFECTIVE 3 OS Arabidopsis thaliana GN RHD3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSN0|RHD31_ARATH 1 744 + 744 Gaps:37 90.94 795 78.01 0.0 Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS Arabidopsis thaliana GN At1g72960 PE 2 SV 2
blastp_uniprot_sprot sp|Q0JLS6|RHD3_ORYSJ 1 790 + 790 Gaps:49 94.42 806 72.27 0.0 Protein ROOT HAIR DEFECTIVE 3 OS Oryza sativa subsp. japonica GN RHD3 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FKE9|RHD32_ARATH 1 791 + 791 Gaps:46 92.21 834 66.58 0.0 Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS Arabidopsis thaliana GN At5g45160 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QMH2|RHD31_ORYSJ 1 735 + 735 Gaps:37 83.61 854 65.13 0.0 Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS Oryza sativa subsp. japonica GN Os12g0604600 PE 2 SV 1
blastp_uniprot_sprot sp|Q2R224|RHD32_ORYSJ 1 738 + 738 Gaps:41 87.12 823 60.53 0.0 Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS Oryza sativa subsp. japonica GN Os11g0582300 PE 2 SV 1
blastp_uniprot_sprot sp|A8N5E5|SEY1_COPC7 1 704 + 704 Gaps:78 85.46 784 35.07 2e-95 Protein SEY1 OS Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) GN SEY1 PE 3 SV 1
blastp_uniprot_sprot sp|B0D0N9|SEY1_LACBS 1 690 + 690 Gaps:76 83.31 785 33.94 6e-90 Protein SEY1 OS Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN SEY1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CQ46|SEY1_CRYNJ 2 704 + 703 Gaps:89 81.06 829 32.89 5e-85 Protein SEY1 OS Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN SEY1 PE 3 SV 1
blastp_uniprot_sprot sp|P0CQ47|SEY1_CRYNB 2 704 + 703 Gaps:89 81.06 829 32.89 5e-85 Protein SEY1 OS Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN SEY1 PE 3 SV 1
rpsblast_cdd gnl|CDD|203340 1 772 + 772 Gaps:75 100.00 743 50.07 0.0 pfam05879 RHD3 Root hair defective 3 GTP-binding protein (RHD3). This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement. The family also contains the homologous yeast synthetic enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking.
rpsblast_cdd gnl|CDD|206650 1 225 + 225 Gaps:65 94.64 224 41.51 9e-45 cd01851 GBP Guanylate-binding protein (GBP) family (N-terminal domain). Guanylate-binding protein (GBP) N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range) are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP but also to GMP. Furthermore two unique regions around the base and the phosphate-binding areas the guanine and the phosphate caps respectively give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap which constitutes the region analogous to switch I completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach.
rpsblast_kog gnl|CDD|37414 1 763 + 763 Gaps:57 94.56 772 63.01 0.0 KOG2203 KOG2203 KOG2203 GTP-binding protein [General function prediction only].

19 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 699 709 11 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
SUPERFAMILY 1 28 28 SSF52540 none none IPR027417
Phobius 655 674 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Gene3D 51 228 178 G3DSA:3.40.50.300 none none IPR027417
Gene3D 1 19 19 G3DSA:3.40.50.300 none none IPR027417
ProSiteProfiles 1 235 235 PS51715 none GB1/RHD3-type guanine nucleotide-binding (G) domain profile. IPR030386
SUPERFAMILY 58 259 202 SSF52540 none none IPR027417
PANTHER 1 28 28 PTHR11649 none none none
PANTHER 60 539 480 PTHR11649 none none none
Coils 201 222 22 Coil none none none
Pfam 56 754 699 PF05879 none Root hair defective 3 GTP-binding protein (RHD3) IPR008803
Pfam 1 29 29 PF05879 none Root hair defective 3 GTP-binding protein (RHD3) IPR008803
Phobius 675 680 6 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Phobius 710 729 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 681 698 18 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 654 654 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 730 794 65 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 28 28 PTHR11649:SF62 none none none
PANTHER 60 539 480 PTHR11649:SF62 none none none

1 Localization

Analysis Start End Length
TMHMM 676 698 22

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 44   Secretory pathway 5 0.409 0.328 NON-PLANT 44