Protein : Qrob_P0085370.2 Q. robur
Protein Identifier  ? Qrob_P0085370.2 Organism . Name  Quercus robur
Protein Description  (M=1) PTHR31384:SF5 - AUXIN RESPONSE FACTOR 3 (PTHR31384:SF5) Alias (in v1)  Qrob_P0988030.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 750  
Kegg Orthology  K14486
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0006355 regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0009725 response to hormone Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.

25 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|vvi:100245251 1 717 + 717 Gaps:28 95.00 740 73.12 0.0 auxin response factor 3-like
blastp_kegg lcl|pmum:103343484 2 734 + 733 Gaps:37 97.64 719 69.94 0.0 auxin response factor 3-like
blastp_kegg lcl|rcu:RCOM_1011410 1 717 + 717 Gaps:27 96.16 730 69.94 0.0 Auxin response factor putative
blastp_kegg lcl|pper:PRUPEppa002065m1g 2 734 + 733 Gaps:34 97.65 722 70.21 0.0 hypothetical protein
blastp_kegg lcl|tcc:TCM_029792 2 720 + 719 Gaps:27 95.43 744 69.15 0.0 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related isoform 1
blastp_kegg lcl|cic:CICLE_v10014391mg 1 716 + 716 Gaps:23 94.89 743 69.08 0.0 hypothetical protein
blastp_kegg lcl|cit:102630998 1 716 + 716 Gaps:22 94.51 747 68.70 0.0 auxin response factor 3-like
blastp_kegg lcl|fve:101306891 57 717 + 661 Gaps:20 89.86 720 70.79 0.0 auxin response factor 3-like
blastp_kegg lcl|mdm:103446364 2 693 + 692 Gaps:35 93.12 712 70.44 0.0 ARF3 auxin response factor 3
blastp_kegg lcl|cam:101493974 2 714 + 713 Gaps:42 93.66 725 67.30 0.0 auxin response factor 3-like
blastp_pdb 1wid_A 170 270 + 101 Gaps:2 79.23 130 33.98 3e-10 mol:protein length:130 DNA-binding protein RAV1
blastp_uniprot_sprot sp|O23661|ARFC_ARATH 2 526 + 525 Gaps:48 79.77 608 67.22 0.0 Auxin response factor 3 OS Arabidopsis thaliana GN ARF3 PE 1 SV 2
blastp_uniprot_sprot sp|Q0JKI9|ARFB_ORYSJ 30 700 + 671 Gaps:52 92.90 718 51.72 0.0 Auxin response factor 2 OS Oryza sativa subsp. japonica GN ARF2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S985|ARFO_ORYSJ 30 701 + 672 Gaps:67 93.40 712 50.98 0.0 Auxin response factor 15 OS Oryza sativa subsp. japonica GN ARF15 PE 2 SV 1
blastp_uniprot_sprot sp|Q5JMM1|ARFC_ORYSJ 40 718 + 679 Gaps:86 90.70 731 47.21 1e-164 Auxin response factor 3 OS Oryza sativa subsp. japonica GN ARF3 PE 2 SV 1
blastp_uniprot_sprot sp|Q0DGS1|ARFN_ORYSJ 60 690 + 631 Gaps:47 89.96 687 47.41 1e-153 Auxin response factor 14 OS Oryza sativa subsp. japonica GN ARF14 PE 2 SV 2
blastp_uniprot_sprot sp|Q9ZTX9|ARFD_ARATH 63 523 + 461 Gaps:17 59.39 788 52.35 3e-141 Auxin response factor 4 OS Arabidopsis thaliana GN ARF4 PE 1 SV 1
blastp_uniprot_sprot sp|Q94JM3|ARFB_ARATH 33 503 + 471 Gaps:43 54.02 859 46.55 4e-121 Auxin response factor 2 OS Arabidopsis thaliana GN ARF2 PE 1 SV 2
blastp_uniprot_sprot sp|Q5JK20|ARFD_ORYSJ 63 453 + 391 Gaps:21 48.76 808 51.27 1e-119 Auxin response factor 4 OS Oryza sativa subsp. japonica GN ARF4 PE 2 SV 1
blastp_uniprot_sprot sp|Q2QQX6|ARFX_ORYSJ 62 418 + 357 Gaps:14 43.64 841 52.04 1e-116 Auxin response factor 24 OS Oryza sativa subsp. japonica GN ARF24 PE 2 SV 1
blastp_uniprot_sprot sp|Q2R3F5|ARFW_ORYSJ 63 418 + 356 Gaps:30 41.97 853 53.07 3e-115 Auxin response factor 23 OS Oryza sativa subsp. japonica GN ARF23 PE 1 SV 2
rpsblast_cdd gnl|CDD|191545 297 379 + 83 none 100.00 83 57.83 2e-34 pfam06507 Auxin_resp Auxin response factor. A conserved region of auxin-responsive transcription factors.
rpsblast_cdd gnl|CDD|202217 171 273 + 103 Gaps:6 100.00 97 37.11 4e-24 pfam02362 B3 B3 DNA binding domain. This is a family of plant transcription factors with various roles in development the aligned region corresponds the B3 DNA binding domain as described in this domain is found in VP1/AB13 transcription factors. Some proteins also have a second AP2 DNA binding domain pfam00847 such as RAV1. DNA binding activity was demonstrated by.
rpsblast_cdd gnl|CDD|198087 171 272 + 102 Gaps:6 100.00 96 39.58 4e-21 smart01019 B3 B3 DNA binding domain. Two DNA binding proteins RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see ) present in a family of transcription factors while the C-terminal region exhibits homology to the highly conserved C-terminal domain designated B3 of VP1/ABI3 transcription factors. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs respectively and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations.
rpsblast_cdd gnl|CDD|197383 169 271 + 103 Gaps:7 100.00 98 30.61 3e-18 cd10017 B3_DNA Plant-specific B3-DNA binding domain. The plant-specific B3 DNA binding domain superfamily includes the well-characterized auxin response factor (ARF) and the LAV (Leafy cotyledon2 [LEC2]-Abscisic acid insensitive3 [ABI3]-VAL) families as well as the RAV (Related to ABI3 and VP1) and REM (REproductive Meristem) families. LEC2 and ABI3 have been shown to be involved in seed development while other members of the LAV family seem to have a more general role being expressed in many organs during plant development. Members of the ARF family bind to the auxin response element and depending on presence of an activation or repression domain they activate or repress transcription. RAV and REM families are less studied B3 protein famillies.

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 676 711 36 PTHR31384:SF5 none none none
PANTHER 37 640 604 PTHR31384:SF5 none none none
PANTHER 37 640 604 PTHR31384 none none none
Pfam 297 378 82 PF06507 none Auxin response factor IPR010525
Coils 138 159 22 Coil none none none
Gene3D 162 274 113 G3DSA:2.40.330.10 none none IPR015300
SUPERFAMILY 164 281 118 SSF101936 none none IPR015300
SMART 171 273 103 SM01019 none B3 DNA binding domain IPR003340
ProSiteProfiles 171 273 103 PS50863 none B3 DNA-binding domain profile. IPR003340
Pfam 171 272 102 PF02362 none B3 DNA binding domain IPR003340
PANTHER 676 711 36 PTHR31384 none none none

0 Localization

2 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2014_nSecLBD_3P Qrob_Chr08 8 s_1BN2OD_551 s_1B5AYF_599 17,17 0 43,51 lod 1,9229 4,4
Bourran2_2014_rEpiBC_3P Qrob_Chr05 5 s_2GDU0O_517 s_1BT8O3_239 25,81 0 55,45 lod 2,2101 5,5

0 Targeting