Protein : Qrob_P0082290.2 Q. robur
Protein Identifier  ? Qrob_P0082290.2 Organism . Name  Quercus robur
Protein Description  (M=4) PTHR10641:SF494 - TRANSCRIPTION FACTOR MYB108 (PTHR10641:SF494) Alias (in v1)  Qrob_P0919830.1
Gene Prediction Quality  manual_v1 Protein length 

Sequence

Length: 276  
Kegg Orthology  K09422
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0002s19250g 1 271 + 271 Gaps:34 99.66 294 62.46 8e-105 POPTRDRAFT_552570 putative MYB transcription factor family protein
blastp_kegg lcl|tcc:TCM_004878 17 275 + 259 Gaps:23 94.95 297 62.06 1e-102 Myb domain protein 2 putative
blastp_kegg lcl|cit:102615104 1 274 + 274 Gaps:29 99.31 289 58.89 1e-97 transcription factor MYB108-like
blastp_kegg lcl|cic:CICLE_v10021479mg 1 274 + 274 Gaps:29 99.31 289 58.89 1e-97 hypothetical protein
blastp_kegg lcl|pop:POPTR_0014s11230g 1 271 + 271 Gaps:25 99.65 287 61.19 6e-97 POPTRDRAFT_731647 putative MYB transcription factor family protein
blastp_kegg lcl|pxb:103956865 4 274 + 271 Gaps:16 97.23 289 56.94 6e-96 transcription factor MYB108-like
blastp_kegg lcl|rcu:RCOM_1345780 17 271 + 255 Gaps:23 93.94 264 65.32 1e-94 r2r3-myb transcription factor putative
blastp_kegg lcl|mdm:103411849 17 273 + 257 Gaps:13 89.97 289 59.23 1e-93 transcription factor MYB108-like
blastp_kegg lcl|pxb:103953105 17 274 + 258 Gaps:21 90.38 291 59.32 4e-93 transcription factor MYB108
blastp_kegg lcl|cmo:103500004 1 275 + 275 Gaps:21 100.00 280 57.14 2e-92 transcription factor MYB108-like
blastp_pdb 1h8a_C 21 126 + 106 Gaps:3 82.03 128 42.86 2e-24 mol:protein length:128 MYB TRANSFORMING PROTEIN
blastp_pdb 1a5j_A 21 126 + 106 Gaps:3 95.45 110 42.86 2e-23 mol:protein length:110 B-MYB
blastp_pdb 1gv2_A 21 126 + 106 Gaps:3 100.00 105 42.86 1e-22 mol:protein length:105 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1msf_C 24 126 + 103 Gaps:3 97.14 105 44.12 1e-22 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1mse_C 24 126 + 103 Gaps:3 97.14 105 44.12 1e-22 mol:protein length:105 C-Myb DNA-Binding Domain
blastp_pdb 1h89_C 21 128 + 108 Gaps:5 94.97 159 43.71 4e-22 mol:protein length:159 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 1h88_C 21 128 + 108 Gaps:5 94.97 159 43.71 4e-22 mol:protein length:159 MYB PROTO-ONCOGENE PROTEIN
blastp_pdb 3zqc_J 24 125 + 102 Gaps:1 77.10 131 36.63 5e-15 mol:protein length:131 MYB3
blastp_pdb 3zqc_G 24 125 + 102 Gaps:1 77.10 131 36.63 5e-15 mol:protein length:131 MYB3
blastp_pdb 3zqc_D 24 125 + 102 Gaps:1 77.10 131 36.63 5e-15 mol:protein length:131 MYB3
blastp_uniprot_sprot sp|Q9LDE1|MY108_ARATH 17 155 + 139 none 43.03 323 82.73 2e-75 Transcription factor MYB108 OS Arabidopsis thaliana GN MYB108 PE 1 SV 1
blastp_uniprot_sprot sp|P81391|MYB05_ANTMA 18 128 + 111 none 54.15 205 76.58 9e-59 Myb-related protein 305 OS Antirrhinum majus GN MYB305 PE 2 SV 1
blastp_uniprot_sprot sp|P81396|MYB40_ANTMA 19 131 + 113 Gaps:1 57.58 198 74.56 1e-57 Myb-related protein 340 OS Antirrhinum majus GN MYB340 PE 2 SV 1
blastp_uniprot_sprot sp|Q9LK95|MYB21_ARATH 19 128 + 110 none 48.67 226 73.64 5e-57 Transcription factor MYB21 OS Arabidopsis thaliana GN MYB21 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SPG9|MYB24_ARATH 19 124 + 106 none 49.53 214 75.47 4e-56 Transcription factor MYB24 OS Arabidopsis thaliana GN MYB24 PE 1 SV 1
blastp_uniprot_sprot sp|Q9SSA1|MYB57_ARATH 17 127 + 111 none 53.88 206 72.07 6e-55 Transcription factor MYB57 OS Arabidopsis thaliana GN MYB57 PE 2 SV 1
blastp_uniprot_sprot sp|Q4JL84|MYB59_ARATH 21 130 + 110 none 46.81 235 61.82 1e-44 Transcription factor MYB59 OS Arabidopsis thaliana GN MYB59 PE 2 SV 2
blastp_uniprot_sprot sp|Q9LX82|MYB48_ARATH 23 134 + 112 none 43.75 256 60.71 2e-44 Transcription factor MYB48 OS Arabidopsis thaliana GN MYB48 PE 2 SV 1
blastp_uniprot_sprot sp|Q4JL76|MYBA2_ORYSJ 21 130 + 110 none 45.45 242 60.00 1e-41 Myb-related protein MYBAS2 OS Oryza sativa subsp. japonica GN MYBAS2 PE 2 SV 1
blastp_uniprot_sprot sp|Q53NK6|MYBA1_ORYSJ 21 144 + 124 none 52.32 237 52.42 6e-41 Myb-related protein MYBAS1 OS Oryza sativa subsp. japonica GN MYBAS1 PE 2 SV 1

11 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 24 71 48 PF00249 none Myb-like DNA-binding domain IPR001005
Pfam 77 120 44 PF00249 none Myb-like DNA-binding domain IPR001005
PANTHER 17 246 230 PTHR10641:SF494 none none none
ProSiteProfiles 19 75 57 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
Gene3D 19 74 56 G3DSA:1.10.10.60 none none IPR009057
ProSiteProfiles 76 126 51 PS51294 none Myb-type HTH DNA-binding domain profile. IPR017930
PANTHER 17 246 230 PTHR10641 none none none
SMART 76 124 49 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
SMART 23 73 51 SM00717 none SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains IPR001005
SUPERFAMILY 21 118 98 SSF46689 none none IPR009057
Gene3D 75 125 51 G3DSA:1.10.10.60 none none IPR009057

0 Localization

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

0 Targeting