Protein : Qrob_P0082280.2 Q. robur
Protein Identifier  ? Qrob_P0082280.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) KOG3195 - Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only]. Gene Prediction Quality  validated
Protein length 

Sequence

Length: 159  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0016021 integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0013s00770g 1 154 + 154 none 84.15 183 86.36 2e-93 POPTRDRAFT_570691 FAM18-like family protein
blastp_kegg lcl|tcc:TCM_026796 1 154 + 154 none 84.15 183 83.77 5e-93 Uncharacterized protein isoform 1
blastp_kegg lcl|rcu:RCOM_1345570 1 154 + 154 none 84.15 183 83.77 8e-93 Protein FAM18B putative
blastp_kegg lcl|pop:POPTR_0005s01380g 1 154 + 154 none 84.15 183 85.06 5e-92 hypothetical protein
blastp_kegg lcl|cic:CICLE_v10002622mg 1 154 + 154 none 84.15 183 82.47 8e-92 hypothetical protein
blastp_kegg lcl|csv:101219996 1 154 + 154 none 84.15 183 83.12 9e-92 protein ECHIDNA-like
blastp_kegg lcl|cit:102608293 1 154 + 154 none 84.15 183 81.82 3e-91 Golgi apparatus membrane protein-like protein ECHIDNA-like
blastp_kegg lcl|pxb:103941873 1 154 + 154 none 84.15 183 83.12 4e-91 Golgi apparatus membrane protein-like protein ECHIDNA
blastp_kegg lcl|mdm:103425154 1 154 + 154 none 84.15 183 83.12 4e-91 Golgi apparatus membrane protein-like protein ECHIDNA
blastp_kegg lcl|mdm:103401525 1 154 + 154 none 84.15 183 83.12 4e-91 Golgi apparatus membrane protein-like protein ECHIDNA
blastp_uniprot_sprot sp|Q8LEK2|TVP23_ARATH 5 154 + 150 none 80.65 186 81.33 5e-89 Golgi apparatus membrane protein-like protein ECHIDNA OS Arabidopsis thaliana GN ECH PE 2 SV 1
blastp_uniprot_sprot sp|Q9Y7K7|TVP23_SCHPO 12 154 + 143 Gaps:2 64.38 219 44.68 1e-32 Golgi apparatus membrane protein tvp23 OS Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN tvp23 PE 3 SV 1
blastp_uniprot_sprot sp|Q86I95|TV23A_DICDI 4 154 + 151 Gaps:2 75.25 198 41.61 1e-32 Uncharacterized Golgi apparatus membrane protein-like protein 1 OS Dictyostelium discoideum GN DDB_G0276319 PE 3 SV 1
blastp_uniprot_sprot sp|Q8IQC1|TVP23_DROME 9 155 + 147 Gaps:1 66.37 223 39.86 1e-30 Uncharacterized Golgi apparatus membrane protein-like protein CG5021 OS Drosophila melanogaster GN CG5021 PE 2 SV 2
blastp_uniprot_sprot sp|B0CQN9|TVP23_LACBS 12 154 + 143 Gaps:2 53.01 266 43.97 2e-30 Golgi apparatus membrane protein TVP23 OS Laccaria bicolor (strain S238N-H82 / ATCC MYA-4686) GN TVP23 PE 3 SV 1
blastp_uniprot_sprot sp|Q54LC9|TV23B_DICDI 8 154 + 147 Gaps:3 55.94 261 39.73 5e-30 Uncharacterized Golgi apparatus membrane protein-like protein 2 OS Dictyostelium discoideum GN DDB_G0286703 PE 3 SV 1
blastp_uniprot_sprot sp|Q29S14|TV23B_BOVIN 4 155 + 152 Gaps:2 74.04 208 35.06 3e-29 Golgi apparatus membrane protein TVP23 homolog B OS Bos taurus GN TVP23B PE 2 SV 1
blastp_uniprot_sprot sp|Q5R9I4|TV23B_PONAB 4 155 + 152 Gaps:2 75.12 205 35.06 5e-29 Golgi apparatus membrane protein TVP23 homolog B OS Pongo abelii GN TVP23B PE 2 SV 1
blastp_uniprot_sprot sp|Q9D8T4|TV23B_MOUSE 4 155 + 152 Gaps:2 75.12 205 35.06 8e-29 Golgi apparatus membrane protein TVP23 homolog B OS Mus musculus GN Tvp23b PE 1 SV 1
blastp_uniprot_sprot sp|A2Q9P5|TVP23_ASPNC 12 154 + 143 Gaps:3 75.00 192 38.19 9e-29 Golgi apparatus membrane protein tvp23 OS Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN tvp23 PE 3 SV 1
rpsblast_cdd gnl|CDD|191380 11 152 + 142 Gaps:2 99.29 141 47.14 1e-39 pfam05832 DUF846 Eukaryotic protein of unknown function (DUF846). This family consists of several of unknown function from a variety of eukaryotic organisms.
rpsblast_kog gnl|CDD|38405 11 155 + 145 Gaps:1 67.61 213 48.61 3e-46 KOG3195 KOG3195 KOG3195 Uncharacterized membrane protein NPD008/CGI-148 [General function prediction only].

9 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Phobius 126 130 5 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 131 150 20 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 151 158 8 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
PANTHER 1 155 155 PTHR13019 none none IPR008564
Phobius 28 58 31 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 103 125 23 TRANSMEMBRANE none Region of a membrane-bound protein predicted to be embedded in the membrane. none
Phobius 1 27 27 NON_CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. none
Phobius 59 102 44 CYTOPLASMIC_DOMAIN none Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. none
Pfam 12 152 141 PF05832 none Eukaryotic protein of unknown function (DUF846) IPR008564

3 Localization

Analysis Start End Length
TMHMM 103 125 22
TMHMM 29 51 22
TMHMM 130 149 19

4 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpiBC_3P Qrob_Chr12 12 s_1B73S5_217 v_7050_211 28,31 26,37 28,45 lod 4.5 11.6
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran2_2015_nSecLBD_3P Qrob_Chr12 12 s_A4YYC_633 s_2F1IZB_703 18,64 18,01 21,53 lod 6.5 17.2
Bourran2_2014_nSeqBC_3P Qrob_Chr12 12 s_1EO8V5_710 s_1A2VMU_355 11,04 0 32,58 lod 1,7196 4,7

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 52   Secretory pathway 3 0.857 0.036 NON-PLANT 52