Protein : Qrob_P0080520.2 Q. robur
Protein Identifier  ? Qrob_P0080520.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=11) PF03110 - SBP domain Gene Prediction Quality  validated
Protein length 

Sequence

Length: 249  
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0 Synonyms

2 GO Terms

Identifier Name Description
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

22 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0018s14680g 3 248 + 246 Gaps:11 54.03 472 59.22 1e-90 hypothetical protein
blastp_kegg lcl|vvi:100246757 3 234 + 232 Gaps:3 46.20 500 62.34 1e-82 promoter-binding protein SPL10
blastp_kegg lcl|vvi:100254075 3 248 + 246 Gaps:11 51.36 477 51.84 7e-61 squamosa promoter-binding-like protein 12-like
blastp_kegg lcl|pda:103707046 3 248 + 246 Gaps:15 52.26 465 47.74 2e-51 squamosa promoter-binding-like protein 3
blastp_kegg lcl|pda:103701439 3 248 + 246 Gaps:15 52.26 465 46.91 1e-49 squamosa promoter-binding-like protein 12
blastp_kegg lcl|rcu:RCOM_1079880 3 248 + 246 Gaps:10 51.76 483 44.40 4e-49 LIGULELESS1 protein putative
blastp_kegg lcl|pda:103720901 3 248 + 246 Gaps:12 52.36 466 46.31 9e-45 squamosa promoter-binding-like protein 12
blastp_kegg lcl|tcc:TCM_008772 3 248 + 246 Gaps:13 51.46 480 41.30 2e-43 Squamosa promoter binding protein-like 2 putative isoform 1
blastp_kegg lcl|mus:103999844 3 247 + 245 Gaps:17 51.53 458 47.88 5e-42 squamosa promoter-binding-like protein 12
blastp_kegg lcl|fve:101311824 3 248 + 246 Gaps:9 51.88 480 40.96 2e-41 squamosa promoter-binding-like protein 12-like
blastp_pdb 1ul4_A 3 30 + 28 none 29.79 94 71.43 2e-06 mol:protein length:94 squamosa promoter binding protein-like 4
blastp_uniprot_sprot sp|Q5Z818|SPL12_ORYSJ 3 166 + 164 Gaps:15 36.00 475 43.27 2e-31 Squamosa promoter-binding-like protein 12 OS Oryza sativa subsp. japonica GN SPL12 PE 2 SV 1
blastp_uniprot_sprot sp|A2YGR5|SPL12_ORYSI 3 166 + 164 Gaps:15 36.00 475 42.69 4e-30 Squamosa promoter-binding-like protein 12 OS Oryza sativa subsp. indica GN SPL12 PE 2 SV 1
blastp_uniprot_sprot sp|A3A2Z8|SPL3_ORYSJ 3 163 + 161 Gaps:6 35.61 469 41.92 8e-28 Squamosa promoter-binding-like protein 3 OS Oryza sativa subsp. japonica GN SPL3 PE 2 SV 1
blastp_uniprot_sprot sp|A2X0Q6|SPL3_ORYSI 3 163 + 161 Gaps:6 35.61 469 41.92 8e-28 Squamosa promoter-binding-like protein 3 OS Oryza sativa subsp. indica GN SPL3 PE 2 SV 1
blastp_uniprot_sprot sp|Q653Z5|SPL11_ORYSJ 3 248 + 246 Gaps:29 67.35 343 38.96 2e-22 Squamosa promoter-binding-like protein 11 OS Oryza sativa subsp. japonica GN SPL11 PE 2 SV 1
blastp_uniprot_sprot sp|Q6H509|SPL4_ORYSJ 3 74 + 72 Gaps:4 30.28 251 51.32 8e-16 Squamosa promoter-binding-like protein 4 OS Oryza sativa subsp. japonica GN SPL4 PE 2 SV 1
blastp_uniprot_sprot sp|Q9FZK0|SPL11_ARATH 3 161 + 159 Gaps:20 38.42 393 40.40 3e-14 Squamosa promoter-binding-like protein 11 OS Arabidopsis thaliana GN SPL11 PE 2 SV 2
blastp_uniprot_sprot sp|Q9S840|SPL2_ARATH 3 229 + 227 Gaps:40 46.54 419 38.46 1e-13 Squamosa promoter-binding-like protein 2 OS Arabidopsis thaliana GN SPL2 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S9L0|SPL10_ARATH 3 186 + 184 Gaps:31 41.16 396 41.72 8e-12 Squamosa promoter-binding-like protein 10 OS Arabidopsis thaliana GN SPL10 PE 2 SV 2
blastp_uniprot_sprot sp|Q9M2Q6|SPL15_ARATH 3 55 + 53 Gaps:2 15.54 354 54.55 2e-10 Squamosa promoter-binding-like protein 15 OS Arabidopsis thaliana GN SPL15 PE 2 SV 1
rpsblast_cdd gnl|CDD|190527 3 34 + 32 none 40.51 79 75.00 4e-14 pfam03110 SBP SBP domain. SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.

6 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
SUPERFAMILY 3 36 34 SSF103612 none none IPR004333
PANTHER 3 247 245 PTHR31251:SF5 none none none
PANTHER 3 247 245 PTHR31251 none none none
Gene3D 3 18 16 G3DSA:4.10.1100.10 none none IPR004333
Pfam 3 33 31 PF03110 none SBP domain IPR004333
ProSiteProfiles 1 31 31 PS51141 none Zinc finger SBP-type profile. IPR004333

0 Localization

14 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nEpis_3P Qrob_Chr12 12 s_1AOES6_1466 s_1B0DDG_1094 28,97 28,55 30,1 lod 3.6 8.4
Bourran2_2014_nPriLBD*_3P Qrob_Chr11 11 v_12066_307 s_1B15GJ_447 3,37 0,57 16,17 lod 3,4299 6,9
Bourran2_2014_nP_A4 Qrob_Chr11 11 s_1B58GB_1413 s_1A5BYY_1671 11,15 0 42,38 lod 1,8913 4,5
Bourran2_2002_QTL16_peak_Bud_burst_A4 Qrob_Chr11 11 s_A9OIA_166 s_1C6WBF_114 21,23 2,83 42,83 lod 5,1 7,2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2014_nP_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 7,9 0,09 30,09 lod 2,3636 5
Bourran2_2014_nPriBD_3P Qrob_Chr11 11 v_11486_194 s_1AT3E_2335 5,54 0,4 20,6 lod 2,6345 5,9
Bourran1_2003_QTL6_peak_Bud_burst_A4 Qrob_Chr11 11 v_12066_307 s_1A9FKZ_348 3,59 0 20,89 lod 3,4 9,4
PM_1999_QTL17_peak_Bud_burst_3P Qrob_Chr11 11 s_1A9FKZ_348 v_11486_883 4,8 0 24,8 lod 3,5 6,2
Bourran_2000_2002_QTL1_Delta.F Qrob_Chr11 11 v_AC14YL05_1355 s_2F1WOG_696 10.96 3,25 16,39 lod 25.0121 0.2
Bourran_2000_2002_QTL5_Delta.F Qrob_Chr11 11 s_1BD29X_620 s_2F1WOG_696 2.94 1,08 16,39 lod 5.936 0.05
Bourran2_2014_vEpiBC*_3P Qrob_Chr11 11 s_1A5GRX_415 v_4456_500 9,37 0 19,27 lod 3,513 9,3
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL1_d13Cf Qrob_Chr11 11 s_1A9FKZ_348 v_7268_36 13.33 3,98 19,87 lod 29.1377 0.18
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL5_d13Cf Qrob_Chr11 11 s_1BD29X_620 s_1A5BYY_1671 2.26 1,08 11,24 lod 5.8451 0.037

0 Targeting