Protein : Qrob_P0079640.2 Q. robur
Protein Identifier  ? Qrob_P0079640.2 Organism . Name  Quercus robur
Score  28.0 Score Type  egn
Protein Description  (M=1) PTHR16223:SF10 - TRANSCRIPTION FACTOR BHLH128-RELATED (PTHR16223:SF10) Gene Prediction Quality  validated
Protein length 

Sequence

Length: 285  
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0 Synonyms

1 GO Terms

Identifier Name Description
GO:0046983 protein dimerization activity The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits.

21 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|pop:POPTR_0001s46530g 1 270 + 270 Gaps:10 93.96 298 47.14 3e-65 POPTRDRAFT_753683 basic helix-loop-helix family protein
blastp_kegg lcl|pop:POPTR_0011s16100g 1 283 + 283 Gaps:14 98.99 298 45.08 4e-64 POPTRDRAFT_772207 basic helix-loop-helix family protein
blastp_kegg lcl|tcc:TCM_033386 1 280 + 280 Gaps:25 97.86 281 50.55 3e-63 Basic helix-loop-helix DNA-binding superfamily protein putative
blastp_kegg lcl|rcu:RCOM_0140320 21 280 + 260 Gaps:7 92.01 288 44.91 8e-61 DNA binding protein putative
blastp_kegg lcl|vvi:100240953 1 281 + 281 Gaps:13 98.94 283 47.50 9e-61 transcription factor bHLH52-like
blastp_kegg lcl|pper:PRUPE_ppa025945mg 83 284 + 202 Gaps:24 100.00 218 49.08 1e-56 hypothetical protein
blastp_kegg lcl|pxb:103952075 83 282 + 200 Gaps:20 69.93 306 52.34 2e-55 uncharacterized LOC103952075
blastp_kegg lcl|cit:102629520 32 282 + 251 Gaps:13 80.78 307 47.58 6e-55 transcription factor bHLH52-like
blastp_kegg lcl|mdm:103427968 83 270 + 188 Gaps:32 69.18 292 53.96 4e-53 uncharacterized LOC103427968
blastp_kegg lcl|cic:CICLE_v10017579mg 32 282 + 251 Gaps:26 79.33 329 45.59 5e-53 hypothetical protein
blastp_uniprot_sprot sp|Q9SA82|BH052_ARATH 87 282 + 196 Gaps:22 75.00 264 40.91 7e-31 Transcription factor bHLH52 OS Arabidopsis thaliana GN BHLH52 PE 2 SV 1
blastp_uniprot_sprot sp|Q84RD0|BH053_ARATH 47 280 + 234 Gaps:34 81.79 291 38.66 2e-27 Transcription factor bHLH53 OS Arabidopsis thaliana GN BHLH53 PE 2 SV 1
blastp_uniprot_sprot sp|Q8S3D2|BH087_ARATH 149 215 + 67 Gaps:1 18.23 373 48.53 1e-10 Transcription factor bHLH87 OS Arabidopsis thaliana GN BHLH87 PE 2 SV 1
blastp_uniprot_sprot sp|O81313|IND_ARATH 154 215 + 62 Gaps:4 33.33 198 45.45 4e-10 Transcription factor IND OS Arabidopsis thaliana GN IND PE 1 SV 3
blastp_uniprot_sprot sp|Q7XAQ6|LAX_ORYSJ 159 211 + 53 none 24.65 215 52.83 1e-09 Transcription factor LAX PANICLE OS Oryza sativa subsp. japonica GN LAX PE 1 SV 1
blastp_uniprot_sprot sp|Q9M041|BH140_ARATH 146 211 + 66 none 7.24 912 40.91 1e-08 Transcription factor bHLH140 OS Arabidopsis thaliana GN BHLH140 PE 4 SV 1
blastp_uniprot_sprot sp|Q9T072|BH025_ARATH 156 215 + 60 none 18.29 328 43.33 3e-07 Transcription factor bHLH25 OS Arabidopsis thaliana GN BHLH25 PE 2 SV 2
blastp_uniprot_sprot sp|O80536|PIF3_ARATH 158 220 + 63 none 12.02 524 39.68 9e-07 Transcription factor PIF3 OS Arabidopsis thaliana GN PIF3 PE 1 SV 1
blastp_uniprot_sprot sp|Q9FHA2|ALC_ARATH 66 220 + 155 Gaps:17 69.52 210 32.19 1e-06 Transcription factor ALC OS Arabidopsis thaliana GN ALC PE 2 SV 1
blastp_uniprot_sprot sp|Q9LXD8|HEC3_ARATH 149 215 + 67 Gaps:1 30.36 224 47.06 1e-06 Transcription factor HEC3 OS Arabidopsis thaliana GN HEC3 PE 1 SV 1
rpsblast_cdd gnl|CDD|197674 164 211 + 48 Gaps:3 96.23 53 39.22 1e-07 smart00353 HLH helix loop helix domain.

7 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
Pfam 164 208 45 PF00010 none Helix-loop-helix DNA-binding domain IPR011598
PANTHER 152 273 122 PTHR16223 none none none
SUPERFAMILY 159 217 59 SSF47459 none none IPR011598
PANTHER 152 273 122 PTHR16223:SF10 none none none
Gene3D 159 212 54 G3DSA:4.10.280.10 none none IPR011598
ProSiteProfiles 158 207 50 PS50888 none Myc-type, basic helix-loop-helix (bHLH) domain profile. IPR011598
SMART 164 213 50 SM00353 none helix loop helix domain IPR011598

0 Localization

3 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8

0 Targeting