Protein : Qrob_P0079190.2 Q. robur
Protein Identifier  ? Qrob_P0079190.2 Organism . Name  Quercus robur
Score  100.0 Score Type  egn
Protein Description  (M=1) K02931 - large subunit ribosomal protein L5 Gene Prediction Quality  validated
Protein length 

Sequence

Length: 263  
Kegg Orthology  K02931
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0 Synonyms

4 GO Terms

Identifier Name Description
GO:0003735 structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
GO:0005622 intracellular The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO:0005840 ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
GO:0006412 translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.

39 Blast

Analysis Hit Start End Strand Length Note Hit Coverage Hit Length Hit Pident E Val Hit Description
blastp_kegg lcl|cic:CICLE_v10021696mg 1 262 + 262 Gaps:4 99.63 267 77.44 2e-146 hypothetical protein
blastp_kegg lcl|cit:102619460 1 262 + 262 Gaps:4 99.63 267 77.44 2e-146 50S ribosomal protein L5 chloroplastic-like
blastp_kegg lcl|vvi:100251632 1 262 + 262 Gaps:6 99.62 265 76.52 3e-140 50S ribosomal protein L5 chloroplastic-like
blastp_kegg lcl|tcc:TCM_005273 1 260 + 260 Gaps:9 99.62 266 77.36 1e-138 Ribosomal L5P family protein
blastp_kegg lcl|pper:PRUPE_ppa010127mg 1 260 + 260 Gaps:5 99.62 262 77.39 1e-138 hypothetical protein
blastp_kegg lcl|pmum:103332075 1 260 + 260 Gaps:5 99.62 262 77.01 2e-138 50S ribosomal protein L5 chloroplastic
blastp_kegg lcl|pxb:103941337 1 260 + 260 Gaps:9 99.62 260 78.38 1e-135 50S ribosomal protein L5 chloroplastic
blastp_kegg lcl|sly:101250331 2 262 + 261 Gaps:5 98.87 265 74.05 3e-134 50S ribosomal protein L5 chloroplastic-like
blastp_kegg lcl|rcu:RCOM_1616390 1 260 + 260 Gaps:6 99.62 265 74.24 3e-134 50S ribosomal protein L5 putative
blastp_kegg lcl|mdm:103408635 1 260 + 260 Gaps:9 99.62 260 77.99 4e-134 50S ribosomal protein L5 chloroplastic
blastp_pdb 3bbo_H 43 260 + 218 Gaps:2 99.09 220 76.61 5e-122 mol:protein length:220 Ribosomal Protein L5
blastp_pdb 1iq4_B 59 236 + 178 none 99.44 179 57.87 7e-76 mol:protein length:179 50S RIBOSOMAL PROTEIN L5
blastp_pdb 1iq4_A 59 236 + 178 none 99.44 179 57.87 7e-76 mol:protein length:179 50S RIBOSOMAL PROTEIN L5
blastp_pdb 1vp0_G 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_pdb 1voy_G 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_pdb 1vow_G 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_pdb 1vou_G 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_pdb 1vor_G 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_pdb 1pny_D 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_pdb 1pnu_D 60 236 + 177 none 99.44 178 55.37 7e-71 mol:protein length:178 50S ribosomal protein L5
blastp_uniprot_sprot sp|O04603|RK5_ARATH 1 260 + 260 Gaps:5 99.62 262 70.11 3e-130 50S ribosomal protein L5 chloroplastic OS Arabidopsis thaliana GN RPL5 PE 2 SV 1
blastp_uniprot_sprot sp|P82192|RK5_SPIOL 43 260 + 218 Gaps:2 99.09 220 76.61 2e-121 50S ribosomal protein L5 chloroplastic OS Spinacia oleracea GN RPL5 PE 1 SV 2
blastp_uniprot_sprot sp|Q9ZST0|RK5_ORYSJ 48 260 + 213 Gaps:1 76.70 279 66.36 2e-100 50S ribosomal protein L5 chloroplastic OS Oryza sativa subsp. japonica GN RPL5 PE 2 SV 2
blastp_uniprot_sprot sp|B8HMR6|RL5_CYAP4 60 236 + 177 none 98.33 180 63.28 6e-80 50S ribosomal protein L5 OS Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN rplE PE 3 SV 1
blastp_uniprot_sprot sp|Q8R7W6|RL5_THETN 59 234 + 176 none 98.32 179 59.66 4e-79 50S ribosomal protein L5 OS Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN rplE PE 3 SV 1
blastp_uniprot_sprot sp|P73308|RL5_SYNY3 60 235 + 176 none 97.78 180 63.07 4e-79 50S ribosomal protein L5 OS Synechocystis sp. (strain PCC 6803 / Kazusa) GN rplE PE 3 SV 2
blastp_uniprot_sprot sp|B0K5Q5|RL5_THEPX 59 234 + 176 none 98.32 179 59.09 2e-78 50S ribosomal protein L5 OS Thermoanaerobacter sp. (strain X514) GN rplE PE 3 SV 1
blastp_uniprot_sprot sp|B0KCL2|RL5_THEP3 59 234 + 176 none 98.32 179 59.09 2e-78 50S ribosomal protein L5 OS Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN rplE PE 3 SV 1
blastp_uniprot_sprot sp|Q0AUJ2|RL5_SYNWW 59 235 + 177 none 99.44 178 59.89 2e-78 50S ribosomal protein L5 OS Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) GN rplE PE 3 SV 1
blastp_uniprot_sprot sp|B0JHZ1|RL5_MICAN 60 235 + 176 none 98.32 179 64.20 4e-78 50S ribosomal protein L5 OS Microcystis aeruginosa (strain NIES-843) GN rplE PE 3 SV 1

8 Domain Motifs

Analysis Begin End Length Domain Identifier Cross Ref Description Inter Pro
PANTHER 60 259 200 PTHR11994 none none IPR002132
ProSitePatterns 114 130 17 PS00358 none Ribosomal protein L5 signature. IPR020929
Hamap 58 236 179 MF_01333_B none 50S ribosomal protein L5 [rplE]. IPR020930
Pfam 81 137 57 PF00281 none Ribosomal protein L5 IPR002132
SUPERFAMILY 60 235 176 SSF55282 none none IPR022803
PANTHER 60 259 200 PTHR11994:SF4 none none none
Pfam 142 234 93 PF00673 none ribosomal L5P family C-terminus IPR002132
Gene3D 59 235 177 G3DSA:3.30.1440.10 none none IPR022803

0 Localization

5 Qtllist

Qtl Name Chromosome Name Linkage Group Prox Marker Dist Marker Position QTL Pos One Pos Two Test Type Test Value R 2
Bourran2_2015_nSeqBC_3P Qrob_Chr11 11 s_1DG9PM_867 s_1BZ083_1312 26,06 25,47 27,72 lod 3.6 7.1
Bourran2_2015_nP_3P Qrob_Chr12 12 v_10140_295 v_838_303 16 14,69 18,01 lod 5.1 13.7
Bourran1_2004_QTL4_peak_Bud_burst_3P Qrob_Chr04 4 s_1AHUWN_1101 s_1BRNG7_1618 30,55 0 47,55 lod 2,8 7,4
Bourran1_2000_QTL3_peak_Bud_burst_3P Qrob_Chr04 4 s_1A6DJQ_418 s_1A1PEC_1268 23,09 9,09 44,09 lod 2,3 6,8
NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL7_d13Cf Qrob_Chr04 4 s_1B91MJ_705 s_1AHIKX_640 33.92 12,11 48,31 lod 6.1865 0.023

1 Targeting

Analysis Start End Length Location Reliability Signal Peptide Cut Off Mitochondrion Cut Off Network Signal Peptide Length
TargetP 1 62   Mitochondrion 2 0.028 0.894 NON-PLANT 62