7 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0005525 | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
| GO:0007017 | microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
| GO:0003924 | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. |
| GO:0043234 | protein complex | A stable macromolecular complex composed (only) of two or more polypeptide subunits along with any covalently attached molecules (such as lipid anchors or oligosaccharide) or non-protein prosthetic groups (such as nucleotides or metal ions). Prosthetic group in this context refers to a tightly bound cofactor. The component polypeptide subunits may be identical. |
| GO:0051258 | protein polymerization | The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. |
| GO:0005874 | microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. |
| GO:0005200 | structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. |
43 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|cam:101504198 | 1 | 445 | + | 445 | none | 100.00 | 445 | 99.78 | 0.0 | tubulin beta-3 chain-like |
| blastp_kegg | lcl|mtr:MTR_2g031310 | 1 | 445 | + | 445 | none | 100.00 | 445 | 99.10 | 0.0 | Tubulin beta chain |
| blastp_kegg | lcl|gmx:547917 | 1 | 442 | + | 442 | none | 99.10 | 446 | 99.32 | 0.0 | beta-tubulin |
| blastp_kegg | lcl|gmx:100818878 | 1 | 445 | + | 445 | none | 99.78 | 446 | 98.65 | 0.0 | tubulin beta-3 chain-like |
| blastp_kegg | lcl|pda:103709839 | 1 | 445 | + | 445 | none | 100.00 | 445 | 98.43 | 0.0 | tubulin beta chain |
| blastp_kegg | lcl|pda:103719630 | 1 | 445 | + | 445 | none | 100.00 | 445 | 98.20 | 0.0 | tubulin beta chain-like |
| blastp_kegg | lcl|cic:CICLE_v10015255mg | 1 | 444 | + | 444 | none | 100.00 | 444 | 98.65 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|cit:102615364 | 1 | 444 | + | 444 | none | 100.00 | 444 | 98.65 | 0.0 | tubulin beta-3 chain-like |
| blastp_kegg | lcl|pvu:PHAVU_006G126100g | 1 | 442 | + | 442 | none | 98.88 | 447 | 98.87 | 0.0 | hypothetical protein |
| blastp_kegg | lcl|rcu:RCOM_1336530 | 1 | 442 | + | 442 | none | 99.55 | 444 | 98.87 | 0.0 | tubulin beta chain putative |
| blastp_pdb | 3iz0_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 beta tubulin Chain B from PDB 1JFF |
| blastp_pdb | 3edl_G | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 Beta tubulin |
| blastp_pdb | 3edl_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 Beta tubulin |
| blastp_pdb | 3dco_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 Bovine Beta Tubulin |
| blastp_pdb | 2xrp_G | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_E | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_C | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2xrp_A | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2wbe_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 TUBULIN BETA-2B CHAIN |
| blastp_pdb | 2p4n_B | 1 | 430 | + | 430 | none | 96.63 | 445 | 87.67 | 0.0 | mol:protein length:445 Tubulin beta chain |
| blastp_uniprot_sprot | sp|Q40665|TBB3_ORYSJ | 1 | 445 | + | 445 | Gaps:1 | 100.00 | 446 | 97.98 | 0.0 | Tubulin beta-3 chain OS Oryza sativa subsp. japonica GN TUBB3 PE 1 SV 2 |
| blastp_uniprot_sprot | sp|P46265|TBB5_ORYSJ | 1 | 445 | + | 445 | Gaps:2 | 100.00 | 447 | 97.76 | 0.0 | Tubulin beta-5 chain OS Oryza sativa subsp. japonica GN TUBB5 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q41784|TBB7_MAIZE | 1 | 442 | + | 442 | none | 99.33 | 445 | 97.96 | 0.0 | Tubulin beta-7 chain OS Zea mays GN TUBB7 PE 1 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZPP0|TBB1_ELEIN | 1 | 444 | + | 444 | Gaps:1 | 100.00 | 445 | 97.98 | 0.0 | Tubulin beta-1 chain OS Eleusine indica GN TUBB1 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q6VAF7|TBB5_GOSHI | 1 | 445 | + | 445 | none | 100.00 | 445 | 97.53 | 0.0 | Tubulin beta-5 chain OS Gossypium hirsutum PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZPN8|TBB3_ELEIN | 1 | 445 | + | 445 | Gaps:1 | 100.00 | 446 | 96.64 | 0.0 | Tubulin beta-3 chain OS Eleusine indica GN TUBB3 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|Q9ZRB0|TBB3_WHEAT | 1 | 444 | + | 444 | Gaps:1 | 100.00 | 445 | 96.85 | 0.0 | Tubulin beta-3 chain OS Triticum aestivum GN TUBB3 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P37832|TBB7_ORYSJ | 1 | 444 | + | 444 | Gaps:1 | 99.77 | 444 | 97.07 | 0.0 | Tubulin beta-7 chain OS Oryza sativa subsp. japonica GN TUBB7 PE 1 SV 2 |
| blastp_uniprot_sprot | sp|Q9ZRA9|TBB4_WHEAT | 1 | 445 | + | 445 | Gaps:1 | 99.78 | 445 | 96.40 | 0.0 | Tubulin beta-4 chain OS Triticum aestivum GN TUBB4 PE 2 SV 1 |
| blastp_uniprot_sprot | sp|P18025|TBB1_MAIZE | 1 | 430 | + | 430 | none | 96.41 | 446 | 95.81 | 0.0 | Tubulin beta-1 chain OS Zea mays GN TUBB1 PE 1 SV 1 |
36 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Coils | 408 | 446 | 39 | Coil | none | none | none |
| Pfam | 3 | 222 | 220 | PF00091 | none | Tubulin/FtsZ family, GTPase domain | IPR003008 |
| SUPERFAMILY | 244 | 429 | 186 | SSF55307 | none | none | IPR008280 |
| Gene3D | 1 | 263 | 263 | G3DSA:3.40.50.1440 | none | none | IPR003008 |
| SMART | 246 | 383 | 138 | SM00865 | none | Tubulin/FtsZ family, C-terminal domain | IPR018316 |
| SMART | 47 | 244 | 198 | SM00864 | none | Tubulin/FtsZ family, GTPase domain | IPR003008 |
| Gene3D | 264 | 373 | 110 | G3DSA:3.30.1330.20 | none | none | IPR018316 |
| PANTHER | 1 | 439 | 439 | PTHR11588 | none | none | IPR000217 |
| PRINTS | 151 | 172 | 22 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 176 | 189 | 14 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 10 | 30 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 132 | 150 | 19 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 93 | 104 | 12 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 106 | 130 | 25 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 190 | 210 | 21 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 370 | 398 | 29 | PR01161 | none | Tubulin signature | IPR000217 |
| PRINTS | 51 | 70 | 20 | PR01161 | none | Tubulin signature | IPR000217 |
| ProSitePatterns | 1 | 4 | 4 | PS00228 | "Reactome:REACT_152" | Tubulin-beta mRNA autoregulation signal. | IPR013838 |
| SUPERFAMILY | 1 | 243 | 243 | SSF52490 | none | none | IPR003008 |
| PANTHER | 1 | 439 | 439 | PTHR11588:SF66 | none | none | none |
| Gene3D | 374 | 430 | 57 | G3DSA:1.10.287.600 | none | none | IPR023123 |
| PRINTS | 245 | 258 | 14 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 152 | 164 | 13 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 108 | 126 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 88 | 99 | 12 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 329 | 343 | 15 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 230 | 239 | 10 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 377 | 388 | 12 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 311 | 329 | 19 | PR01163 | none | Beta-tubulin signature | IPR002453 |
| PRINTS | 347 | 370 | 24 | PR01163 | none | Beta-tubulin signature | IPR002453 |
8 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran2_2014_nLBD*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 34,91 | 16,12 | 53,62 | lod | 2,4961 | 5,2 |
| Bourran2_2014_rEpiBC*_A4 | Qrob_Chr08 | 8 | v_12498_318 | v_12364_308 | 35,77 | 14,11 | 55,31 | lod | 2,9413 | 6,2 |
| Bourran2_2015_nEpiBC_3P | Qrob_Chr12 | 12 | s_1B73S5_217 | v_7050_211 | 28,31 | 26,37 | 28,45 | lod | 4.5 | 11.6 |
| Bourran2_2014_aSeqBC_A4 | Qrob_Chr08 | 8 | v_15999_278 | v_AP13YL15_395 | 32,52 | 4,22 | 57,22 | lod | 2,7561 | 6,7 |
| Bourran2_2014_nFork*_A4 | Qrob_Chr08 | 8 | PIE175 | s_1CD7GJ_1398 | 31,22 | 5,24 | 57,24 | lod | 2,6724 | 6,8 |
| Bourran2_2015_rEpiBC_3P | Qrob_Chr08 | 8 | s_A9TNV_543 | v_11837_70 | 9,93 | 9,83 | 11,15 | lod | 3.3 | 7.3 |
| Champenoux_2015_nSeqBC_A4 | Qrob_Chr08 | 8 | v_AD7YD13_501 | s_1A7IED_780 | 43,44 | 43,42 | 43,99 | lod | 3.7 | 8.9 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL3_d13Cf | Qrob_Chr08 | 8 | v_5216_549 | v_11625_20 | 37.08 | 12,26 | 54,9 | lod | 6.5888 | 0.04 |
