4 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
| GO:0005622 | intracellular | The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. |
| GO:0005840 | ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. |
| GO:0006412 | translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|vvi:100266209 | 1 | 555 | + | 555 | Gaps:28 | 99.63 | 541 | 57.88 | 0.0 | uncharacterized LOC100266209 |
| blastp_kegg | lcl|pop:POPTR_0017s12050g | 1 | 556 | + | 556 | Gaps:26 | 100.00 | 568 | 53.52 | 4e-178 | POPTRDRAFT_668584 hypothetical protein |
| blastp_kegg | lcl|tcc:TCM_018568 | 1 | 555 | + | 555 | Gaps:22 | 99.64 | 561 | 51.34 | 9e-167 | Uncharacterized protein isoform 1 |
| blastp_kegg | lcl|cit:102611893 | 1 | 556 | + | 556 | Gaps:83 | 99.81 | 518 | 53.77 | 1e-157 | uncharacterized LOC102611893 |
| blastp_kegg | lcl|rcu:RCOM_0340280 | 210 | 556 | + | 347 | Gaps:29 | 64.96 | 508 | 63.03 | 4e-136 | hypothetical protein |
| blastp_kegg | lcl|cic:CICLE_v10013783mg | 210 | 553 | + | 344 | Gaps:22 | 93.33 | 360 | 60.12 | 9e-132 | hypothetical protein |
| blastp_kegg | lcl|sot:102583446 | 1 | 555 | + | 555 | Gaps:104 | 99.84 | 616 | 39.84 | 2e-118 | uncharacterized LOC102583446 |
| blastp_kegg | lcl|sly:101244638 | 227 | 555 | + | 329 | Gaps:24 | 71.62 | 437 | 53.04 | 2e-99 | uncharacterized LOC101244638 |
| blastp_kegg | lcl|mus:103999430 | 1 | 555 | + | 555 | Gaps:69 | 99.63 | 544 | 34.69 | 3e-73 | uncharacterized protein LOC103999430 |
| blastp_kegg | lcl|crb:CARUB_v10013334mg | 1 | 555 | + | 555 | Gaps:60 | 78.67 | 572 | 40.00 | 8e-62 | hypothetical protein |
| rpsblast_cdd | gnl|CDD|191883 | 313 | 556 | + | 244 | Gaps:6 | 99.60 | 247 | 40.24 | 6e-48 | pfam07891 DUF1666 Protein of unknown function (DUF1666). These sequences are derived from hypothetical plant proteins of unknown function. The region in question is approximately 250 residues long. |
8 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| PANTHER | 228 | 546 | 319 | PTHR10759 | none | none | IPR008195 |
| Phobius | 50 | 72 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 23 | 44 | 22 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 1 | 22 | 22 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| PANTHER | 228 | 546 | 319 | PTHR10759:SF1 | none | none | none |
| Phobius | 73 | 556 | 484 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| Phobius | 45 | 49 | 5 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Pfam | 313 | 555 | 243 | PF07891 | none | Protein of unknown function (DUF1666) | IPR012870 |
3 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
| Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
