4 GO Terms
| Identifier | Name | Description |
|---|---|---|
| GO:0003735 | structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. |
| GO:0005622 | intracellular | The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm. |
| GO:0005840 | ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. |
| GO:0006412 | translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. |
11 Blast
| Analysis | Hit | Start | End | Strand | Length | Note | Hit Coverage | Hit Length | Hit Pident | E Val | Hit Description |
|---|---|---|---|---|---|---|---|---|---|---|---|
| blastp_kegg | lcl|vvi:100259485 | 1 | 231 | + | 231 | Gaps:12 | 100.00 | 231 | 69.70 | 4e-107 | uncharacterized LOC100259485 |
| blastp_kegg | lcl|pvu:PHAVU_004G029200g | 1 | 231 | + | 231 | Gaps:13 | 100.00 | 242 | 66.53 | 5e-102 | hypothetical protein |
| blastp_kegg | lcl|cmo:103498491 | 1 | 231 | + | 231 | Gaps:16 | 100.00 | 225 | 72.44 | 6e-101 | uncharacterized protein At5g19025 |
| blastp_kegg | lcl|fve:101314009 | 1 | 231 | + | 231 | Gaps:13 | 100.00 | 232 | 70.26 | 9e-101 | uncharacterized protein LOC101314009 |
| blastp_kegg | lcl|csv:101215142 | 1 | 231 | + | 231 | Gaps:16 | 100.00 | 225 | 72.44 | 3e-100 | uncharacterized LOC101215142 |
| blastp_kegg | lcl|gmx:100818449 | 1 | 231 | + | 231 | Gaps:11 | 99.59 | 243 | 66.12 | 3e-99 | uncharacterized LOC100818449 |
| blastp_kegg | lcl|tcc:TCM_018572 | 1 | 231 | + | 231 | Gaps:21 | 100.00 | 240 | 63.75 | 3e-98 | Ribosomal protein L34e superfamily protein putative |
| blastp_kegg | lcl|pmum:103330015 | 1 | 223 | + | 223 | Gaps:12 | 96.54 | 231 | 70.40 | 2e-97 | uncharacterized protein At5g19025 |
| blastp_kegg | lcl|pper:PRUPE_ppa010896mg | 1 | 223 | + | 223 | Gaps:12 | 96.54 | 231 | 70.40 | 3e-97 | hypothetical protein |
| blastp_kegg | lcl|cam:101489684 | 1 | 231 | + | 231 | Gaps:11 | 100.00 | 232 | 64.66 | 3e-96 | uncharacterized LOC101489684 |
| blastp_uniprot_sprot | sp|P0C8Q9|Y5902_ARATH | 131 | 231 | + | 101 | Gaps:19 | 37.07 | 259 | 56.25 | 5e-22 | Uncharacterized protein At5g19025 OS Arabidopsis thaliana GN At5g19025 PE 2 SV 3 |
7 Domain Motifs
| Analysis | Begin | End | Length | Domain Identifier | Cross Ref | Description | Inter Pro |
|---|---|---|---|---|---|---|---|
| Phobius | 107 | 127 | 21 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 1 | 57 | 57 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
| PANTHER | 7 | 231 | 225 | PTHR10759 | none | none | IPR008195 |
| PANTHER | 7 | 231 | 225 | PTHR10759:SF2 | none | none | none |
| Phobius | 58 | 80 | 23 | TRANSMEMBRANE | none | Region of a membrane-bound protein predicted to be embedded in the membrane. | none |
| Phobius | 81 | 106 | 26 | NON_CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | none |
| Phobius | 128 | 231 | 104 | CYTOPLASMIC_DOMAIN | none | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | none |
3 Qtllist
| Qtl Name | Chromosome Name | Linkage Group | Prox Marker | Dist Marker | Position QTL | Pos One | Pos Two | Test Type | Test Value | R 2 |
|---|---|---|---|---|---|---|---|---|---|---|
| Bourran1_2003_QTL2_peak_Bud_burst_A4 | Qrob_Chr02 | 2 | s_1B0H8U_259 | s_1CB1VL_554 | 17 | 0 | 87 | lod | 3,3 | 8,7 |
| Bourran2_2004_QTL9_peak_Bud_burst_3P | Qrob_Chr02 | 2 | s_1C34E9_788 | v_12238_322 | 50 | 25 | 75 | lod | 4,4 | 10,1 |
| NancyGreenhouseCO2_2001_ambient_elevated_leaf_cellulose_QTL2_d13Cf | Qrob_Chr02 | 2 | s_1AQA4Z_1644 | s_1AK5QX_947 | 53.67 | 14,01 | 79,68 | lod | 5.6594 | 0.03 |
